Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 8.5e-148 526.9 259 100.0
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 6.1e-138 494.2 259 95.4
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 2.0e-136 489.2 259 94.2
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 9.8e-136 486.9 259 93.8
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 1.3e-135 486.5 266 92.9
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 1.1e-131 473.4 260 92.3
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 5.9e-125 451.1 262 87.0
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 3.0e-121 438.7 262 85.5
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 4.4e-120 434.9 264 83.0
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 7.5e-120 434.1 262 84.7
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 1.7e-119 433.0 262 84.7
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 3.7e-119 431.8 262 84.7
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 3.2e-118 428.7 262 82.1
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 5.6e-107 391.3 262 76.7
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 3.9e-92 342.0 261 65.1
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 3.3e-91 339.0 261 64.8
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 4.3e-91 338.6 225 72.4
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 7.3e-91 337.8 261 64.0
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 4.7e-90 335.1 261 63.6
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 6.2e-90 334.7 261 63.6
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 8.1e-90 334.3 261 64.0
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 1.4e-89 333.6 261 65.9
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 1.2e-88 330.5 261 64.0
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 2.6e-88 329.3 252 66.7
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 9.9e-88 327.4 261 61.7
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 2.9e-87 325.9 261 62.5
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 2.9e-87 325.9 256 62.9
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.9e-86 323.2 261 63.2
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 2.4e-86 322.8 261 63.6
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 4.2e-86 322.0 220 72.3
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 2.7e-85 319.3 261 60.2
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 3.5e-85 318.9 247 64.4
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 4.6e-85 318.5 261 60.5
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 1.0e-84 317.4 225 66.7
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 6.6e-84 314.7 261 62.5
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 8.7e-84 314.3 229 66.8
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.5e-83 313.5 225 66.2
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 1.9e-83 313.2 253 62.1
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 1.9e-83 313.2 231 65.4
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 1.9e-83 313.2 256 62.5
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 3.3e-83 312.4 256 61.3
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 3.3e-83 312.4 220 69.5
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 4.3e-83 312.0 261 59.8
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 9.6e-83 310.8 262 60.3
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 2.8e-82 309.3 261 59.8
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 2.8e-82 309.3 262 60.3
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 2.8e-82 309.3 261 58.6
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 3.6e-82 308.9 260 60.8
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 6.2e-82 308.1 263 62.0
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 1.1e-81 307.4 262 59.9
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 1.1e-81 307.4 262 59.9
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.4e-81 307.0 261 61.7
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 1.8e-81 306.6 256 60.5
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 3.4e-80 302.4 257 60.7
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 4.5e-80 302.0 226 64.6
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 4.5e-80 302.0 262 59.2
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 7.6e-80 301.2 259 59.1
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 9.9e-80 300.8 229 64.6
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 9.9e-80 300.8 259 61.4
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 1.3e-79 300.4 261 59.0
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 1.3e-79 300.4 223 66.8
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 1.7e-79 300.1 261 59.0
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 2.2e-79 299.7 261 58.2
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 3.8e-79 298.9 261 57.9
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 4.9e-79 298.5 264 61.0
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 4.9e-79 298.5 261 60.2
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 6.4e-79 298.1 261 59.4
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 6.4e-79 298.1 263 59.7
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 1.2e-77 293.9 263 57.8
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 2.1e-77 293.1 223 65.5
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 2.7e-77 292.7 226 64.2
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 3.5e-77 292.4 226 63.7
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 1.0e-76 290.8 203 68.5
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 3.0e-76 289.3 223 64.6
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 3.0e-76 289.3 271 59.0
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 3.0e-76 289.3 216 65.3
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 5.1e-76 288.5 324 50.3
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 8.7e-76 287.7 223 62.8
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 2.5e-75 286.2 270 55.6
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 1.3e-74 283.9 262 54.2
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 1.3e-74 283.9 261 58.6
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 2.8e-74 282.7 236 59.3
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 8.1e-74 281.2 211 65.9
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 4.0e-73 278.9 257 55.6
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 2.0e-72 276.6 210 65.2
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 2.9e-71 272.7 312 48.7
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 3.8e-71 272.3 288 50.0
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 1.6e-69 266.9 260 55.8
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 2.7e-69 266.2 187 68.4
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 6.0e-69 265.0 211 57.3
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.8e-68 263.5 311 50.8
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 3.0e-68 262.7 187 68.4
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 3.3e-67 259.2 223 57.0
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.3e-66 257.3 223 58.3
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 6.2e-66 255.0 189 66.1
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 8.2e-66 254.6 256 51.6
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 1.9e-62 243.4 207 55.6
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 6.0e-61 238.4 220 53.2
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 7.9e-61 238.0 224 52.2
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.9e-54 216.9 152 65.1
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 7.2e-54 214.9 183 57.4
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 2.0e-51 206.8 176 60.8
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 3.3e-35 152.9 221 38.9
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 4.4e-35 152.5 113 70.8
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 4.4e-35 152.5 120 62.5
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 2.5e-30 136.7 180 41.7
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 3.4e-27 126.3 170 41.8
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 7.5e-27 125.2 170 41.2
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 1.1e-25 121.3 197 35.5
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 1.3e-23 114.4 165 35.2
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 3.0e-20 103.2 214 32.7
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 2.0e-19 100.5 192 33.3
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 1.7e-15 87.4 136 39.0
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 2.3e-12 77.0 75 56.0
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 4.4e-11 72.8 118 40.7
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 1.2e-08 64.7 44 61.4
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 1.2e-08 64.7 44 61.4
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 4.5e-08 62.8 65 50.8


User provided reference genes

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