Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.2e-188 662.9 322 100.0
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 8.9e-171 603.6 322 92.9
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 8.9e-171 603.6 322 92.9
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.8e-163 579.3 326 89.3
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.0e-162 575.9 326 89.0
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.3e-161 573.2 321 89.7
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 4.8e-148 528.1 325 80.6
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 5.8e-146 521.2 324 80.2
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 7.6e-146 520.8 324 80.9
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 7.9e-143 510.8 324 79.3
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 3.9e-142 508.4 347 77.8
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 2.5e-141 505.8 325 78.2
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 2.8e-132 475.7 324 75.6
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 2.8e-124 449.1 232 91.8
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 1.4e-123 446.8 324 67.0
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 7.2e-120 434.5 324 68.5
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.2e-119 433.7 322 66.8
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 7.9e-119 431.0 324 66.4
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.1e-117 427.2 335 63.9
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 7.4e-117 424.5 322 65.5
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.4e-115 420.2 325 64.0
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 2.4e-115 419.5 323 64.4
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.0e-114 416.4 249 75.5
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 4.5e-114 415.2 321 63.6
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.3e-113 413.7 321 62.9
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 3.8e-113 412.1 249 76.3
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 6.5e-113 411.4 248 76.2
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 8.5e-113 411.0 321 62.6
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 8.5e-113 411.0 248 74.6
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 4.2e-112 408.7 248 74.2
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 5.5e-112 408.3 323 63.2
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 5.5e-112 408.3 251 74.5
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.2e-111 407.1 246 74.4
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.6e-111 406.8 232 79.7
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.6e-111 406.8 232 79.7
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 3.6e-111 405.6 324 62.3
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 6.1e-111 404.8 244 74.6
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 6.1e-111 404.8 248 73.8
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 5.1e-110 401.7 248 73.8
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 1.1e-109 400.6 249 72.7
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.1e-109 400.6 245 73.9
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.5e-109 400.2 324 63.3
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.5e-109 400.2 249 73.9
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 3.3e-109 399.1 247 73.3
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 9.7e-109 397.5 249 73.1
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 1.3e-108 397.1 321 61.7
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.7e-108 396.7 251 73.7
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 2.8e-108 396.0 249 71.9
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 3.7e-108 395.6 255 71.0
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.8e-107 393.3 306 63.4
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 2.4e-107 392.9 334 59.3
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 5.3e-107 391.7 325 60.0
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 9.1e-107 391.0 249 71.5
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 1.5e-106 390.2 247 71.3
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.0e-105 387.5 324 62.0
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.3e-105 387.1 248 72.2
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 3.8e-105 385.6 325 60.9
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 5.0e-105 385.2 246 72.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 8.5e-105 384.4 282 65.6
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 2.5e-104 382.9 251 68.9
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 2.5e-104 382.9 260 67.7
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 2.5e-104 382.9 235 74.0
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.2e-104 382.5 320 59.1
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 3.2e-104 382.5 323 59.4
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.2e-104 382.5 249 71.1
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 1.2e-103 380.6 250 70.4
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 2.7e-103 379.4 298 64.4
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 3.6e-103 379.0 324 57.1
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 4.7e-103 378.6 323 60.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 6.7e-102 374.8 245 70.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.7e-101 370.9 254 67.7
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.7e-101 370.9 254 67.7
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 9.7e-101 370.9 323 57.6
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.1e-99 367.5 246 69.1
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.1e-99 367.5 248 68.5
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 2.4e-99 366.3 250 69.2
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 3.1e-99 365.9 251 68.5
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 4.5e-98 362.1 251 67.3
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 7.7e-98 361.3 312 58.7
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 8.5e-97 357.8 229 72.9
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 2.5e-96 356.3 247 66.4
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 2.5e-96 356.3 234 70.1
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 7.2e-96 354.8 324 58.0
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 2.3e-94 349.7 270 61.5
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 9.7e-93 344.4 251 62.9
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 3.7e-92 342.4 302 56.3
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 4.8e-92 342.0 208 74.0
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 6.3e-92 341.7 316 53.2
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 1.2e-90 337.4 207 75.4
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 1.0e-89 334.3 207 74.9
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 2.6e-85 319.7 295 56.3
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.7e-84 315.8 320 52.5
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 2.0e-82 310.1 247 61.5
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 8.3e-76 288.1 238 58.4
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 8.3e-76 288.1 232 59.1
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.8e-75 287.0 191 70.2
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.5e-72 277.3 249 57.4
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 5.6e-72 275.4 186 65.1
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 5.7e-69 265.4 149 81.2
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 9.8e-69 264.6 203 70.0
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 2.2e-68 263.5 207 63.3
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.9e-65 252.7 166 66.9
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 1.6e-63 247.3 177 66.7
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.9e-56 223.8 173 61.8
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 8.9e-54 214.9 269 43.1
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.6e-47 194.1 244 45.1
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 2.9e-44 183.3 204 49.0
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 3.2e-43 179.9 200 48.0
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 4.7e-39 166.0 181 50.8
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 2.7e-34 150.2 108 63.0
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.4e-30 137.1 99 64.6
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 1.3e-28 131.3 122 51.6
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 1.9e-27 127.5 94 66.0
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.9e-27 127.5 98 61.2
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.3e-25 121.3 118 52.5
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.3e-25 120.6 118 53.4
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.6e-23 114.4 150 40.7
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.1e-22 111.7 178 37.1
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 6.9e-22 109.0 63 79.4
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 4.9e-20 102.8 158 40.5
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.9e-19 100.9 147 40.1
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.3e-17 94.0 58 72.4
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 9.0e-14 82.0 210 31.4
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-10 71.6 95 43.2
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 3.5e-10 70.1 116 37.1
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 3.0e-09 67.0 115 36.5
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.5e-08 64.7 118 33.9
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 1.5e-08 64.7 56 50.0
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 4.3e-08 63.2 61 49.2
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 3.7e-07 60.1 56 53.6
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 3.7e-07 60.1 50 62.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 4.8e-07 59.7 40 67.5
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 5.3e-06 56.2 50 58.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 6.9e-06 55.8 49 59.2
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 6.9e-06 55.8 50 60.0
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 9.0e-06 55.5 50 58.0


User provided reference genes

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