Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p01380 Brassica napus HOM05D000886 ORTHO05D000525 7.1e-116 420.6 215 100.0
A10p01400 Brassica napus HOM05D000886 ORTHO05D000525 3.8e-109 398.3 215 96.3
BraA10t42416Z Brassica rapa HOM05D000886 ORTHO05D000525 3.8e-109 398.3 215 96.3
BolC5t28920H Brassica oleracea HOM05D000886 ORTHO05D000525 7.9e-107 390.6 215 94.9
BcaB03g15796 Brassica carinata HOM05D000886 ORTHO05D000525 1.3e-77 293.5 175 86.3
AL1G12040 Arabidopsis lyrata HOM05D000886 ORTHO05D000525 1.0e-66 257.3 176 77.3
Thhalv10009718m.g Eutrema salsugineum HOM05D000886 ORTHO05D000525 1.0e-66 257.3 176 75.6
Carub.0001s0176 Capsella rubella HOM05D000886 ORTHO05D000525 6.1e-59 231.5 175 69.1
THA.LOC104827360 Tarenaya hassleriana HOM05D000886 ORTHO05D000525 8.4e-32 141.4 167 47.3
Gohir.D07G133800 Gossypium hirsutum HOM05D000886 ORTHO05D000525 3.6e-19 99.4 180 35.6
Gorai.001G145100 Gossypium raimondii HOM05D000886 ORTHO05D000525 6.2e-19 98.6 180 35.6
Gohir.A07G129450 Gossypium hirsutum HOM05D000886 ORTHO05D000525 5.8e-17 92.0 167 35.9
TWI36G0422 Tripterygium wilfordii HOM05D000886 ORTHO05D000525 5.8e-17 92.0 183 35.0
Ciclev10023267m.g Citrus clementina HOM05D000886 ORTHO05D000525 1.4e-15 87.4 174 35.6
PGSC0003DMG400006389 Solanum tuberosum HOM05D000886 ORTHO05D000525 2.4e-15 86.7 168 34.5
Atru.chr5.962 Acer truncatum HOM05D000886 ORTHO05D000525 4.2e-15 85.9 170 35.3
DCAR_012330 Daucus carota HOM05D000886 ORTHO05D000525 2.1e-14 83.6 175 34.9
Aqoxy7G04062 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 3.5e-14 82.8 182 35.7
Peaxi162Scf01061g00003 Petunia axillaris HOM05D000886 ORTHO05D000525 6.0e-14 82.0 181 34.3
Actinidia35513 Actinidia chinensis HOM05D000886 ORTHO05D000525 7.9e-14 81.6 168 34.5
CAN.G723.34 Capsicum annuum HOM05D000886 ORTHO05D000525 1.3e-13 80.9 168 32.1
Nitab4.5_0001338g0050 Nicotiana tabacum HOM05D000886 ORTHO05D000525 6.7e-13 78.6 179 32.4
Nitab4.5_0004525g0050 Nicotiana tabacum HOM05D000886 ORTHO05D000525 8.7e-13 78.2 179 32.4
Rhsim13G0003000 Rhododendron simsii HOM05D000886 ORTHO05D000525 1.5e-12 77.4 177 31.1
Thecc.01G317200 Theobroma cacao HOM05D000886 ORTHO05D000525 1.5e-12 77.4 137 36.5
Haze_00024 Corylus avellana HOM05D000886 ORTHO05D000525 3.3e-12 76.3 175 32.0
HanXRQChr16g0528461 Helianthus annuus HOM05D000886 ORTHO05D000525 3.3e-12 76.3 168 32.7
Cfa016274 Carpinus fangiana HOM05D000886 ORTHO05D000525 4.3e-12 75.9 168 32.7
Cc00_g29270 Coffea canephora HOM05D000886 ORTHO05D000525 4.3e-12 75.9 168 32.1
TAR365G0209 Trochodendron aralioides HOM05D000886 ORTHO05D000525 5.6e-12 75.5 178 29.8
Cfa016273 Carpinus fangiana HOM05D000886 ORTHO05D000525 7.4e-12 75.1 168 33.3
Cfa016272 Carpinus fangiana HOM05D000886 ORTHO05D000525 9.6e-12 74.7 168 32.1
SGA_v2.0_scaffold198G41114 Striga asiatica HOM05D000886 ORTHO05D000525 9.6e-12 74.7 157 33.1
Lsat_1_v5_gn_4_21321 Lactuca sativa HOM05D000886 ORTHO05D000525 1.3e-11 74.3 168 31.5
Oeu053737.1 Olea europaea HOM05D000886 ORTHO05D000525 1.3e-11 74.3 175 31.4
Solyc01g100680.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 1.3e-11 74.3 164 32.9
Duzib133G0981 Durio zibethinus HOM05D000886 ORTHO05D000525 2.1e-11 73.6 140 35.7
CSS0029635 Camellia sinensis var. sinensis HOM05D000886 ORTHO05D000525 3.6e-11 72.8 168 31.5
CAN.G1076.27 Capsicum annuum HOM05D000886 ORTHO05D000525 3.6e-11 72.8 168 31.0
PGSC0003DMG400042198 Solanum tuberosum HOM05D000886 ORTHO05D000525 3.6e-11 72.8 150 34.0
Migut.N00933 Erythranthe guttata HOM05D000886 ORTHO05D000525 4.8e-11 72.4 188 35.1
CAN.G1076.28 Capsicum annuum HOM05D000886 ORTHO05D000525 1.4e-10 70.9 157 32.5
MELO3C009746.2 Cucumis melo HOM05D000886 ORTHO05D000525 1.8e-10 70.5 151 34.4
COL.COLO4_23199 Corchorus olitorius HOM05D000886 ORTHO05D000525 3.1e-10 69.7 174 32.2
CsaV3_3G040060 Cucumis sativus L. HOM05D000886 ORTHO05D000525 3.1e-10 69.7 151 34.4
Sopen01g044180 Solanum pennellii HOM05D000886 ORTHO05D000525 3.1e-10 69.7 168 31.5
Migut.A01095 Erythranthe guttata HOM05D000886 ORTHO05D000525 4.0e-10 69.3 175 32.0
Peaxi162Scf00102g00087 Petunia axillaris HOM05D000886 ORTHO05D000525 4.0e-10 69.3 160 33.8
Actinidia16870 Actinidia chinensis HOM05D000886 ORTHO05D000525 6.9e-10 68.6 164 30.5
arahy.Tifrunner.gnm1.ann1.DS7W66 Arachis hypogaea HOM05D000886 ORTHO05D000525 6.9e-10 68.6 175 30.3
Thecc.01G317300 Theobroma cacao HOM05D000886 ORTHO05D000525 9.0e-10 68.2 166 30.1
Lj1g0006752 Lotus japonicus HOM05D000886 ORTHO05D000525 1.2e-09 67.8 162 29.6
SalBow3G0713 Salvia bowleyana HOM05D000886 ORTHO05D000525 1.2e-09 67.8 174 29.9
ECA234G2512 Erigeron canadensis HOM05D000886 ORTHO05D000525 1.5e-09 67.4 166 27.7
Nitab4.5_0001338g0080 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.5e-09 67.4 126 34.1
Nitab4.5_0005169g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.5e-09 67.4 180 32.2
Os01g0299700 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 1.5e-09 67.4 178 33.1
MD14G1051900 Malus domestica HOM05D000886 ORTHO05D000525 2.0e-09 67.0 163 33.1
Haze_07614 Corylus avellana HOM05D000886 ORTHO05D000525 2.6e-09 66.6 164 31.7
ECA234G2044 Erigeron canadensis HOM05D000886 ORTHO05D000525 2.6e-09 66.6 168 27.4
SGA_v2.0_scaffold37G14598 Striga asiatica HOM05D000886 ORTHO05D000525 2.6e-09 66.6 175 30.9
Zm00001eb340390 Zea mays HOM05D000886 ORTHO05D000525 2.6e-09 66.6 158 30.4
Atru.chr5.961 Acer truncatum HOM05D000886 ORTHO05D000525 4.5e-09 65.9 176 29.5
Actinidia17919 Actinidia chinensis HOM05D000886 ORTHO05D000525 4.5e-09 65.9 169 28.4
CiPaw.01G083200 Carya illinoinensis HOM05D000886 ORTHO05D000525 4.5e-09 65.9 179 31.8
Glyma.12G144600 Glycine max HOM05D000886 ORTHO05D000525 4.5e-09 65.9 176 31.2
ClCG10G016290 Citrullus lanatus HOM05D000886 ORTHO05D000525 5.8e-09 65.5 152 33.6
PGR083G1422 Punica granatum HOM05D000886 ORTHO05D000525 5.8e-09 65.5 167 30.5
PGSC0003DMG400012475 Solanum tuberosum HOM05D000886 ORTHO05D000525 5.8e-09 65.5 159 31.4
TAR636G3206 Trochodendron aralioides HOM05D000886 ORTHO05D000525 5.8e-09 65.5 178 29.2
arahy.Tifrunner.gnm1.ann1.R5PY9S Arachis hypogaea HOM05D000886 ORTHO05D000525 1.3e-08 64.3 158 31.6
CANSAT25G0076 Cannabis sativa HOM05D000886 ORTHO05D000525 1.3e-08 64.3 172 33.7
Nitab4.5_0002225g0060 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.3e-08 64.3 160 30.6
Nitab4.5_0004382g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.3e-08 64.3 160 31.2
PGR083G1689 Punica granatum HOM05D000886 ORTHO05D000525 1.3e-08 64.3 167 29.3
PGR083G2382 Punica granatum HOM05D000886 ORTHO05D000525 1.3e-08 64.3 167 29.3
Thecc.04G304300 Theobroma cacao HOM05D000886 ORTHO05D000525 1.7e-08 63.9 166 30.1
Nitab4.5_0000712g0220 Nicotiana tabacum HOM05D000886 ORTHO05D000525 2.2e-08 63.5 161 30.4
EL10Ac4g09474 Beta vulgaris HOM05D000886 ORTHO05D000525 3.8e-08 62.8 170 28.2
Nitab4.5_0000712g0170 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.8e-08 62.8 160 30.6
Dinv24473 Davidia involucrata HOM05D000886 ORTHO05D000525 6.4e-08 62.0 142 31.7
Lalb_Chr03g0042881 Lupinus albus HOM05D000886 ORTHO05D000525 1.1e-07 61.2 159 29.6
Aqoxy2G02676 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 1.4e-07 60.8 168 27.4
SHI02776 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-07 60.8 168 29.8
Peaxi162Scf00357g00083 Petunia axillaris HOM05D000886 ORTHO05D000525 1.9e-07 60.5 163 29.4
Peaxi162Scf00357g00084 Petunia axillaris HOM05D000886 ORTHO05D000525 1.9e-07 60.5 163 29.4
Peaxi162Scf00357g00085 Petunia axillaris HOM05D000886 ORTHO05D000525 1.9e-07 60.5 163 29.4
Lj2g0021922 Lotus japonicus HOM05D000886 ORTHO05D000525 2.4e-07 60.1 152 28.3
MBI18_g35538_MAGBIO Magnolia biondii HOM05D000886 ORTHO05D000525 2.4e-07 60.1 152 32.2
Phvul.002G068500 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 2.4e-07 60.1 171 31.0
Nitab4.5_0000312g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.2e-07 59.7 167 31.7
Rhsim04G0117500 Rhododendron simsii HOM05D000886 ORTHO05D000525 3.2e-07 59.7 164 29.3
Sed0011417 Sechium edule HOM05D000886 ORTHO05D000525 3.2e-07 59.7 150 30.0
Migut.O00534 Erythranthe guttata HOM05D000886 ORTHO05D000525 4.2e-07 59.3 161 31.7
Oeu060771.1 Olea europaea HOM05D000886 ORTHO05D000525 4.2e-07 59.3 160 28.1
Rhsim04G0117600 Rhododendron simsii HOM05D000886 ORTHO05D000525 4.2e-07 59.3 166 30.1
PGSC0003DMG400037105 Solanum tuberosum HOM05D000886 ORTHO05D000525 4.2e-07 59.3 105 37.1
arahy.Tifrunner.gnm1.ann1.3SM0CX Arachis hypogaea HOM05D000886 ORTHO05D000525 5.5e-07 58.9 172 26.7
MD12G1053400 Malus domestica HOM05D000886 ORTHO05D000525 5.5e-07 58.9 164 33.5
Nitab4.5_0004310g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 5.5e-07 58.9 160 30.0
Nitab4.5_0014313g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 5.5e-07 58.9 189 31.2
ECA232G4885 Erigeron canadensis HOM05D000886 ORTHO05D000525 7.1e-07 58.5 160 30.0
CAN.G220.20 Capsicum annuum HOM05D000886 ORTHO05D000525 9.3e-07 58.2 157 30.6
Nitab4.5_0000787g0060 Nicotiana tabacum HOM05D000886 ORTHO05D000525 9.3e-07 58.2 178 28.7
Potri.016G028700 Populus trichocarpa HOM05D000886 ORTHO05D000525 9.3e-07 58.2 177 28.8
Nitab4.5_0003544g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.2e-06 57.8 156 29.5
Dinv17692 Davidia involucrata HOM05D000886 ORTHO05D000525 1.6e-06 57.4 160 30.0
Peaxi162Scf00069g00011 Petunia axillaris HOM05D000886 ORTHO05D000525 1.6e-06 57.4 157 31.2
Peaxi162Scf00174g00122 Petunia axillaris HOM05D000886 ORTHO05D000525 1.6e-06 57.4 164 31.1
Solyc08g007350.2 Solanum lycopersicum HOM05D000886 ORTHO05D000525 1.6e-06 57.4 159 28.3
PGSC0003DMG400043674 Solanum tuberosum HOM05D000886 ORTHO05D000525 1.6e-06 57.4 158 32.3
EL10Ac3g07298 Beta vulgaris HOM05D000886 ORTHO05D000525 2.1e-06 57.0 168 31.0
Migut.E01003 Erythranthe guttata HOM05D000886 ORTHO05D000525 2.1e-06 57.0 161 31.1
Migut.E01004 Erythranthe guttata HOM05D000886 ORTHO05D000525 2.1e-06 57.0 161 31.1
Migut.O00604 Erythranthe guttata HOM05D000886 ORTHO05D000525 2.1e-06 57.0 161 31.1
CDE12G0614 Ceratophyllum demersum HOM05D000886 ORTHO05D000525 2.7e-06 56.6 155 29.7
Migut.K00159 Erythranthe guttata HOM05D000886 ORTHO05D000525 2.7e-06 56.6 165 31.5
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 2.7e-06 56.6 160 30.0
Nitab4.5_0000699g0130 Nicotiana tabacum HOM05D000886 ORTHO05D000525 2.7e-06 56.6 156 28.2
Prupe.4G179100 Prunus persica HOM05D000886 ORTHO05D000525 2.7e-06 56.6 160 31.9
Sopen00g013300 Solanum pennellii HOM05D000886 ORTHO05D000525 2.7e-06 56.6 120 31.7
Sopen08g003290 Solanum pennellii HOM05D000886 ORTHO05D000525 2.7e-06 56.6 159 28.3
TWI18G0454 Tripterygium wilfordii HOM05D000886 ORTHO05D000525 2.7e-06 56.6 166 30.1
ATR0693G315 Amborella trichopoda HOM05D000886 ORTHO05D000525 3.5e-06 56.2 101 31.7
CAN.G220.19 Capsicum annuum HOM05D000886 ORTHO05D000525 3.5e-06 56.2 159 30.2
Oeu038044.1 Olea europaea HOM05D000886 ORTHO05D000525 3.5e-06 56.2 175 26.9
Migut.H01133 Erythranthe guttata HOM05D000886 ORTHO05D000525 4.6e-06 55.8 157 30.6
CAN.G220.15 Capsicum annuum HOM05D000886 ORTHO05D000525 6.0e-06 55.5 160 28.1
Migut.E01005 Erythranthe guttata HOM05D000886 ORTHO05D000525 6.0e-06 55.5 161 31.1
Hma1.2p1_0662F.1_g198230 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 6.0e-06 55.5 159 29.6
Psat3g135440 Pisum sativum HOM05D000886 ORTHO05D000525 6.0e-06 55.5 152 28.3
Atru.chr1.1145 Acer truncatum HOM05D000886 ORTHO05D000525 7.9e-06 55.1 159 29.6
Migut.O00481 Erythranthe guttata HOM05D000886 ORTHO05D000525 7.9e-06 55.1 161 30.4
Migut.O00662 Erythranthe guttata HOM05D000886 ORTHO05D000525 7.9e-06 55.1 161 30.4
HanXRQChr15g0495481 Helianthus annuus HOM05D000886 ORTHO05D000525 7.9e-06 55.1 159 30.2
Oeu038042.1 Olea europaea HOM05D000886 ORTHO05D000525 7.9e-06 55.1 175 26.9
Peaxi162Scf00011g01434 Petunia axillaris HOM05D000886 ORTHO05D000525 7.9e-06 55.1 157 28.7
Phvul.008G111200 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 7.9e-06 55.1 157 27.4
SalBow2G0211 Salvia bowleyana HOM05D000886 ORTHO05D000525 7.9e-06 55.1 121 34.7
SalBow6G2700 Salvia bowleyana HOM05D000886 ORTHO05D000525 7.9e-06 55.1 159 31.4


User provided reference genes

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