Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 4.5e-103 377.9 183 100.0
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 3.6e-100 368.2 183 97.8
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 3.6e-100 368.2 183 97.8
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 8.0e-100 367.1 183 97.3
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 4.4e-90 334.7 183 90.7
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 8.9e-83 310.5 183 85.2
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 2.4e-80 302.4 187 82.4
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.2e-79 300.1 186 81.7
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 1.0e-78 297.0 183 81.4
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 1.0e-78 297.0 183 81.4
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.9e-77 292.7 183 80.9
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.9e-77 292.7 183 80.9
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.5e-77 292.4 186 80.6
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.8e-75 286.2 182 80.2
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 9.2e-72 273.9 176 80.1
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.5e-71 271.9 186 78.0
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.6e-68 261.9 189 74.1
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 9.5e-61 237.3 187 66.8
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 3.2e-56 222.2 175 64.6
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 8.6e-54 214.2 182 63.2
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.5e-53 213.4 182 62.6
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.4e-51 206.8 190 62.1
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 2.0e-50 203.0 176 60.2
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 2.9e-49 199.1 194 58.2
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 6.4e-49 198.0 176 60.2
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 8.4e-49 197.6 176 59.7
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 7.1e-48 194.5 176 59.1
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 7.1e-48 194.5 176 59.1
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 7.1e-48 194.5 176 59.1
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 7.8e-47 191.0 178 58.4
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 8.7e-46 187.6 175 58.9
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.4e-41 171.4 184 52.2
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.4e-41 171.4 183 52.5
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 7.8e-39 164.5 164 53.7
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 3.0e-38 162.5 182 53.3
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 3.9e-38 162.2 174 54.6
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 8.7e-38 161.0 176 52.3
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-37 160.2 188 51.6
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.5e-37 159.5 179 53.1
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 4.3e-37 158.7 178 53.4
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.3e-37 158.7 190 50.0
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.6e-37 158.3 190 49.5
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 5.6e-37 158.3 182 47.8
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.3e-37 157.9 190 50.0
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 3.6e-36 155.6 176 50.0
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 4.8e-36 155.2 179 52.0
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.2e-36 154.8 184 48.4
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 6.2e-36 154.8 175 49.7
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 8.1e-36 154.5 126 66.7
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 8.1e-36 154.5 178 48.3
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.4e-35 153.7 173 52.6
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 3.1e-35 152.5 195 43.6
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.1e-35 152.5 183 47.5
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 6.9e-35 151.4 187 46.5
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.9e-35 151.4 190 44.2
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 9.0e-35 151.0 172 51.2
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.2e-34 150.6 182 48.4
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 1.2e-34 150.6 183 50.3
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 2.0e-34 149.8 176 49.4
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 4.5e-34 148.7 177 53.7
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 5.8e-34 148.3 190 49.5
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.6e-34 147.9 180 49.4
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 9.9e-34 147.5 171 48.5
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.9e-34 147.5 193 42.0
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.7e-33 146.7 177 43.5
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.9e-33 146.0 191 46.6
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 2.9e-33 146.0 176 48.3
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 3.8e-33 145.6 184 47.8
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 3.8e-33 145.6 184 48.4
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 4.9e-33 145.2 182 48.9
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 4.9e-33 145.2 187 47.6
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.4e-33 144.8 185 44.9
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 8.4e-33 144.4 187 48.7
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 8.4e-33 144.4 189 46.0
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.1e-32 144.1 179 48.6
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-32 144.1 188 48.9
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.4e-32 143.7 168 47.6
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.4e-32 143.7 186 47.3
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.4e-32 143.7 147 58.5
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.4e-32 143.7 182 47.3
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.9e-32 143.3 178 47.8
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 2.4e-32 142.9 174 50.0
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.2e-32 142.1 180 44.4
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 5.4e-32 141.7 173 46.8
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.1e-32 141.4 167 49.1
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.6e-31 140.2 171 45.0
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.6e-31 140.2 179 46.4
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 2.7e-31 139.4 180 46.7
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.7e-31 139.4 188 44.1
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 3.5e-31 139.0 175 44.0
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 3.5e-31 139.0 195 42.1
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.6e-31 138.7 188 42.0
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 6.0e-31 138.3 187 43.9
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 7.9e-31 137.9 186 41.4
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.0e-30 137.5 181 46.4
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 2.3e-30 136.3 195 45.1
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.3e-30 136.3 181 46.4
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 3.9e-30 135.6 179 45.8
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 3.9e-30 135.6 175 43.4
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.7e-30 134.8 186 46.8
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 8.7e-30 134.4 176 47.7
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 8.7e-30 134.4 192 43.8
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.1e-29 134.0 165 46.7
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.9e-29 133.3 172 44.8
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 4.3e-29 132.1 159 45.9
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 5.6e-29 131.7 193 40.4
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.4e-29 131.3 186 45.7
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 9.6e-29 131.0 174 44.8
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.3e-28 130.6 175 42.3
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-28 130.6 164 47.0
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.6e-28 130.2 177 44.1
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 2.1e-28 129.8 176 46.0
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.7e-28 129.0 176 44.3
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.8e-28 128.6 191 46.1
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 4.8e-28 128.6 184 44.6
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 6.2e-28 128.3 178 46.1
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.1e-28 127.9 201 41.8
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.1e-27 127.5 181 44.8
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.4e-27 127.1 182 47.3
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-27 126.3 157 46.5
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.0e-27 125.6 174 43.1
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 6.9e-27 124.8 181 47.0
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 6.9e-27 124.8 174 42.5
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 9.0e-27 124.4 196 45.4
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.0e-27 124.4 196 45.4
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-26 124.0 186 46.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.0e-26 123.2 180 43.3
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 5.8e-26 121.7 168 47.0
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.3e-25 120.6 211 38.4
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 1.3e-25 120.6 180 46.7
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.3e-25 120.6 184 43.5
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.2e-25 119.8 176 42.6
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 2.2e-25 119.8 195 39.0
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 2.9e-25 119.4 184 41.3
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 3.8e-25 119.0 179 44.7
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.8e-25 119.0 175 40.0
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 8.4e-25 117.9 177 43.5
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 4.2e-24 115.5 178 39.3
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 5.5e-24 115.2 167 44.3
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 7.1e-24 114.8 179 44.1
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.7e-23 112.8 174 39.7
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 6.0e-23 111.7 171 37.4
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-22 110.9 162 44.4
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-22 110.2 138 48.6
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 5.1e-22 108.6 175 42.9
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 3.3e-21 105.9 229 37.1
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 8.2e-20 101.3 170 40.6
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.4e-19 99.8 170 40.0
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.4e-19 99.8 183 38.3
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.6e-18 96.3 151 39.1
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.5e-18 95.5 148 43.2
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 7.6e-18 94.7 176 39.8
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.3e-17 94.0 177 38.4
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-17 94.0 162 38.3
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 4.9e-17 92.0 236 33.9
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 4.9e-17 92.0 156 37.2
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.0e-14 84.3 171 36.3
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 3.0e-14 82.8 196 35.7
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 3.9e-14 82.4 176 34.7
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.7e-14 81.3 108 42.6
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.1e-13 80.9 204 34.3
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.3e-13 79.3 103 38.8
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-11 73.9 102 44.1
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.4e-11 73.2 179 35.2
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 3.1e-11 72.8 196 32.7
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.9e-11 71.6 101 41.6
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 3.4e-10 69.3 139 33.8
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.2e-09 66.6 102 40.2
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-09 66.2 146 33.6
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.7e-07 59.7 179 30.7
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 3.6e-07 59.3 126 34.9
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 6.1e-07 58.5 183 29.5
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-06 57.0 70 47.1
Sed0010143 Sechium edule HOM05D001131 ORTHO05D000972 1.8e-06 57.0 200 26.0
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 3.9e-06 55.8 168 25.0
Sed0004223 Sechium edule HOM05D001131 ORTHO05D000972 3.9e-06 55.8 181 27.1
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.1e-06 55.5 53 49.1
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.8e-06 54.7 58 53.4


User provided reference genes

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