Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 5.8e-175 617.5 313 100.0
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 5.4e-173 610.9 313 98.7
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 1.6e-169 599.4 314 96.8
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 4.0e-168 594.7 314 96.5
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 2.8e-161 572.0 313 94.6
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 2.9e-150 535.4 313 85.0
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 3.5e-148 528.5 314 85.7
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 2.6e-143 512.3 314 81.8
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 1.6e-137 493.0 318 78.9
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 5.1e-131 471.5 313 77.0
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 1.1e-128 463.8 314 75.5
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 2.9e-126 455.7 311 73.6
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 9.1e-120 434.1 313 67.7
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 2.2e-89 333.2 307 54.1
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 9.2e-88 327.8 310 53.9
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 4.5e-87 325.5 305 54.8
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 7.8e-87 324.7 294 56.1
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 1.0e-86 324.3 302 54.3
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.0e-86 324.3 300 53.3
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 2.9e-86 322.8 300 53.3
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 4.3e-85 318.9 295 53.2
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 5.6e-85 318.5 298 53.7
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 1.6e-84 317.0 300 53.3
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 3.6e-84 315.8 303 52.8
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 1.0e-83 314.3 306 51.0
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 1.5e-82 310.5 294 51.7
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 1.5e-82 310.5 306 51.6
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 3.4e-82 309.3 285 53.0
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 5.8e-82 308.5 294 52.4
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 7.5e-82 308.1 295 52.9
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 7.5e-82 308.1 309 51.1
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 1.3e-81 307.4 300 52.0
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 2.2e-81 306.6 298 51.7
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 2.9e-81 306.2 294 51.4
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.9e-81 306.2 286 54.2
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 2.9e-81 306.2 295 52.9
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 7.0e-80 301.6 298 54.4
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 2.7e-79 299.7 301 51.8
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.6e-79 298.9 297 51.2
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.0e-79 298.5 303 50.2
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.0e-79 298.5 303 50.2
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 1.0e-78 297.7 295 50.8
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.3e-78 296.6 303 50.2
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 2.3e-78 296.6 291 51.9
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 2.1e-76 290.0 289 48.8
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.8e-76 289.7 278 54.7
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 6.2e-76 288.5 295 50.2
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 6.2e-76 288.5 294 49.0
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.3e-75 286.6 277 52.3
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 5.2e-75 285.4 280 53.2
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 7.0e-72 275.0 299 48.8
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 2.7e-71 273.1 289 47.4
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 4.6e-71 272.3 288 50.3
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 3.0e-70 269.6 288 47.6
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.1e-69 267.7 302 45.0
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 2.5e-69 266.5 277 48.4
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.5e-69 266.5 288 46.5
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.5e-69 266.5 242 55.0
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.3e-69 266.2 224 58.5
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 4.3e-69 265.8 278 48.9
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 2.1e-68 263.5 217 60.4
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 5.8e-66 255.4 222 56.8
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 7.1e-64 248.4 342 42.7
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 1.2e-63 247.7 280 49.3
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 5.6e-61 238.8 307 44.0
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 2.8e-60 236.5 301 46.2
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 8.9e-59 231.5 222 53.6
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 3.8e-57 226.1 250 46.4
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 1.1e-56 224.6 295 42.4
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.9e-56 223.8 260 45.0
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 4.2e-56 222.6 250 46.4
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 7.8e-55 218.4 295 40.7
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 1.9e-53 213.8 185 58.9
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 3.3e-53 213.0 185 58.9
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 3.3e-53 213.0 249 45.4
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 7.3e-53 211.8 185 58.4
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 7.3e-53 211.8 209 53.1
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.6e-52 210.7 197 52.3
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 2.8e-52 209.9 191 55.0
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 4.6e-47 192.6 143 65.7
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 1.3e-30 137.9 148 44.6
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 2.3e-14 84.0 187 31.0
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 4.1e-11 73.2 153 34.6


User provided reference genes

Program Settings