Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 8.9e-135 484.2 364 100.0
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 1.4e-132 476.9 365 99.2
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 8.6e-122 441.0 375 89.3
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 4.4e-118 428.7 375 90.7
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 2.4e-87 326.6 376 69.7
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 3.4e-86 322.8 397 69.8
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 3.4e-86 322.8 397 67.0
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 5.8e-86 322.0 370 75.7
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 2.2e-85 320.1 385 73.8
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 1.3e-82 310.8 387 71.8
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 6.7e-82 308.5 387 71.3
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 1.6e-80 303.9 394 70.1
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 2.7e-75 286.6 246 75.2
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 2.0e-70 270.4 402 63.7
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 3.9e-66 256.1 389 65.3
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 1.1e-65 254.6 384 69.3
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 2.2e-61 240.4 408 66.7
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 1.7e-37 161.0 243 44.4
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 2.3e-29 134.0 370 49.2
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 1.9e-23 114.4 188 46.3
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 1.2e-22 111.7 217 41.0
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.5e-20 104.0 241 38.6
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 9.5e-20 102.1 212 42.0
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.2e-19 101.7 242 36.4
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.7e-19 99.8 259 35.1
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 6.2e-19 99.4 193 40.9
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 8.1e-19 99.0 234 36.8
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.1e-18 98.6 142 43.7
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.4e-18 98.2 262 35.9
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.8e-18 97.8 183 38.3
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.0e-18 96.7 232 35.8
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.2e-18 96.3 245 39.6
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 5.2e-18 96.3 232 35.8
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 6.8e-18 95.9 247 36.0
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.8e-18 95.9 247 36.0
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.8e-18 95.9 232 35.3
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 1.5e-17 94.7 222 36.9
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.6e-17 94.0 247 36.0
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 5.8e-17 92.8 220 44.5
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 2.2e-16 90.9 260 33.1
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 2.2e-16 90.9 239 34.7
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.9e-16 90.5 213 37.1
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.9e-16 90.5 213 37.1
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.9e-16 89.7 244 39.3
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 6.4e-16 89.4 155 37.4
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.3e-16 89.0 238 34.0
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 1.1e-15 88.6 213 37.6
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.1e-15 88.6 205 37.1
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 1.9e-15 87.8 213 36.6
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 1.9e-15 87.8 213 36.6
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 1.9e-15 87.8 212 36.3
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 2.4e-15 87.4 186 39.8
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.4e-15 87.4 239 33.9
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 3.2e-15 87.0 238 34.5
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 4.1e-15 86.7 238 34.0
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 5.4e-15 86.3 222 35.1
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 7.1e-15 85.9 169 39.1
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 2.1e-14 84.3 209 34.4
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 2.1e-14 84.3 205 35.6
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 2.7e-14 84.0 232 35.8
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 2.7e-14 84.0 230 33.0
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.7e-14 84.0 245 41.6
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 3.5e-14 83.6 235 31.9
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 3.5e-14 83.6 223 34.1
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 6.0e-14 82.8 198 34.8
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 7.8e-14 82.4 220 35.9
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 1.0e-13 82.0 233 32.2
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.3e-13 81.6 213 34.3
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 1.7e-13 81.3 233 35.2
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 2.3e-13 80.9 233 42.9
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.3e-13 80.9 211 33.6
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 3.9e-13 80.1 206 33.5
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 6.6e-13 79.3 232 32.8
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 8.6e-13 79.0 194 35.1
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 8.6e-13 79.0 194 35.1
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.1e-12 78.6 216 32.9
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.3e-12 76.6 232 34.1
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.6e-12 76.3 172 34.9
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 5.6e-12 76.3 242 33.1
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 9.5e-12 75.5 202 34.2
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 1.2e-11 75.1 232 31.9
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.2e-11 75.1 223 38.6
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.6e-11 74.7 139 38.8
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.6e-11 74.7 228 32.5
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 2.1e-11 74.3 232 33.2
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 2.8e-11 73.9 209 32.1
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 3.6e-11 73.6 221 32.1
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 4.7e-11 73.2 199 31.7
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 8.1e-11 72.4 232 29.3
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 8.1e-11 72.4 128 35.9
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 1.1e-10 72.0 247 28.3
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.4e-10 71.6 202 34.2
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.1e-10 70.5 139 36.7
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 3.1e-10 70.5 207 35.7
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 5.2e-10 69.7 200 32.0
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 5.2e-10 69.7 120 36.7
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 5.2e-10 69.7 256 28.9
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.5e-09 68.2 213 32.4
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.0e-09 67.8 202 31.2
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 2.0e-09 67.8 202 36.6
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 2.0e-09 67.8 227 28.6
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 2.6e-09 67.4 207 30.9
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 3.4e-09 67.0 229 31.0
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 4.4e-09 66.6 210 33.8
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 4.4e-09 66.6 217 28.6
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 7.6e-09 65.9 217 31.8
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.7e-08 64.7 206 32.0
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 1.7e-08 64.7 186 30.6
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 3.7e-08 63.5 117 54.7
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 3.7e-08 63.5 134 33.6
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 4.9e-08 63.2 207 31.9
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.9e-08 63.2 125 32.8
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 4.9e-08 63.2 376 24.2
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 6.4e-08 62.8 226 30.1
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 6.4e-08 62.8 155 33.5
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.1e-07 62.0 115 35.7
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.1e-07 62.0 222 34.2
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 1.4e-07 61.6 137 34.3
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.9e-07 61.2 192 31.2
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 2.4e-07 60.8 206 30.6
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.4e-07 60.8 120 32.5
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 4.1e-07 60.1 44 56.8
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 7.1e-07 59.3 155 39.4
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 7.1e-07 59.3 214 28.0
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 3.5e-06 57.0 118 33.9
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 6.0e-06 56.2 201 29.4
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 7.8e-06 55.8 113 34.5


User provided reference genes

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