Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 5.1e-128 461.1 228 100.0
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 5.1e-112 407.9 233 88.8
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 4.0e-101 371.7 238 82.4
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 4.0e-101 371.7 238 82.4
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 9.0e-93 344.0 272 71.0
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.4e-85 319.3 272 67.3
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 5.3e-85 318.2 263 66.2
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 2.2e-83 312.8 259 65.6
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 1.9e-82 309.7 263 63.5
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 4.6e-81 305.1 258 64.7
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 7.9e-81 304.3 248 68.1
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 2.3e-80 302.8 248 67.7
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.1e-77 293.9 257 65.4
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.1e-77 293.9 257 65.4
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 2.4e-69 266.2 257 58.4
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.9e-51 206.1 274 47.1
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 6.5e-51 204.9 247 47.4
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 5.2e-48 195.3 283 42.8
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 9.1e-45 184.5 268 41.4
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 1.0e-43 181.0 308 40.3
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 1.3e-43 180.6 280 42.9
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 1.3e-43 180.6 283 41.0
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 3.8e-43 179.1 310 40.0
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 6.5e-43 178.3 270 43.0
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 1.1e-42 177.6 308 38.6
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.5e-42 177.2 305 38.4
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 4.2e-42 175.6 296 38.9
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 5.5e-42 175.3 307 38.4
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 7.2e-42 174.9 246 42.3
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 1.2e-41 174.1 291 38.8
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 1.6e-41 173.7 307 39.7
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 2.1e-41 173.3 296 38.2
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.7e-41 172.9 304 38.8
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.7e-41 172.9 305 37.0
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 2.7e-41 172.9 304 36.8
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 4.7e-41 172.2 302 38.7
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 6.1e-41 171.8 301 36.9
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 8.0e-41 171.4 302 39.1
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.4e-40 170.6 312 37.2
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.4e-40 170.6 298 39.9
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.4e-40 170.6 298 37.9
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.8e-40 170.2 306 38.2
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.8e-40 170.2 277 40.1
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.0e-40 169.1 298 38.3
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 5.2e-40 168.7 314 37.6
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 6.8e-40 168.3 289 37.7
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.2e-39 167.5 282 40.4
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 1.2e-39 167.5 297 39.1
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.6e-39 166.4 316 36.4
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 3.4e-39 166.0 296 36.8
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 4.4e-39 165.6 293 37.2
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 5.7e-39 165.2 286 38.5
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.3e-38 164.1 276 37.3
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.7e-38 162.5 315 37.1
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 4.9e-38 162.2 292 38.0
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 6.3e-38 161.8 269 39.8
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 6.3e-38 161.8 311 36.0
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 8.3e-38 161.4 283 37.5
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 1.1e-37 161.0 315 36.2
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.4e-37 160.6 278 37.8
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.8e-37 160.2 316 35.8
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 3.1e-37 159.5 299 37.8
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 3.1e-37 159.5 304 37.2
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 4.1e-37 159.1 276 37.3
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 4.1e-37 159.1 305 34.1
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 4.1e-37 159.1 293 36.5
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 5.4e-37 158.7 317 34.7
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 5.4e-37 158.7 313 37.7
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 5.4e-37 158.7 307 34.2
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 9.1e-37 157.9 295 35.6
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 9.1e-37 157.9 314 35.4
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 1.6e-36 157.1 309 37.5
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.6e-36 157.1 332 33.4
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 1.6e-36 157.1 312 36.5
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.0e-36 156.8 284 37.3
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 2.0e-36 156.8 309 37.5
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.0e-36 156.8 309 37.5
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 3.5e-36 156.0 314 36.6
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 3.5e-36 156.0 302 37.4
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 4.5e-36 155.6 312 37.5
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.9e-36 155.2 309 36.9
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-35 154.5 306 37.3
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.0e-35 154.5 309 37.2
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.0e-35 154.5 309 37.2
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.3e-35 154.1 300 36.0
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 1.3e-35 154.1 307 35.8
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 1.7e-35 153.7 308 34.4
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 1.7e-35 153.7 316 35.4
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 2.3e-35 153.3 284 37.7
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 2.9e-35 152.9 299 35.8
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 6.6e-35 151.8 313 32.9
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 8.6e-35 151.4 310 37.7
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 1.1e-34 151.0 294 38.1
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.1e-34 151.0 240 39.6
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.9e-34 150.2 309 36.9
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.3e-34 149.4 267 37.8
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 5.5e-34 148.7 282 37.2
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 7.2e-34 148.3 307 36.8
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 7.2e-34 148.3 241 40.7
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 1.2e-33 147.5 307 36.5
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.2e-33 147.5 330 33.6
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 1.6e-33 147.1 302 34.4
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.8e-33 146.4 302 33.1
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 2.8e-33 146.4 269 37.9
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 1.0e-32 144.4 258 37.6
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.0e-32 144.4 249 35.7
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.0e-32 142.9 248 38.7
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 6.8e-32 141.7 210 38.1
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 6.8e-32 141.7 302 31.8
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 8.9e-32 141.4 317 33.4
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 1.2e-31 141.0 302 32.5
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 1.5e-31 140.6 311 34.4
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 1.5e-31 140.6 226 38.9
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 1.5e-31 140.6 302 33.1
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 2.0e-31 140.2 284 35.2
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 4.4e-31 139.0 320 34.4
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 7.5e-31 138.3 286 33.9
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.3e-30 137.5 276 35.5
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 2.2e-30 136.7 293 33.8
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 2.9e-30 136.3 288 33.3
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 4.9e-30 135.6 318 34.6
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 8.3e-30 134.8 276 36.2
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 8.3e-30 134.8 263 35.0
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 8.3e-30 134.8 235 37.9
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.8e-29 133.7 223 37.2
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 3.2e-29 132.9 251 37.5
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 4.1e-29 132.5 230 39.1
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 4.1e-29 132.5 301 31.2
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 5.4e-29 132.1 273 35.2
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 7.0e-29 131.7 266 35.7
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 1.6e-28 130.6 252 36.9
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.6e-28 130.6 274 34.7
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 4.6e-28 129.0 253 36.4
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 1.0e-27 127.9 301 31.6
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 3.9e-27 125.9 255 35.7
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 3.9e-27 125.9 255 35.7
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 5.0e-27 125.6 260 33.1
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.5e-26 124.0 275 35.3
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 9.5e-26 121.3 261 33.3
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 2.1e-25 120.2 69 88.4
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 2.1e-25 120.2 69 88.4
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 2.1e-25 120.2 275 30.5
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 4.7e-25 119.0 280 32.1
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 6.1e-25 118.6 130 46.2
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 2.3e-24 116.7 65 89.2
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 2.3e-24 116.7 65 89.2
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 5.2e-24 115.5 269 34.9
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 5.8e-23 112.1 261 33.7
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.7e-22 110.5 309 31.1
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 6.4e-22 108.6 298 30.2
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 6.4e-22 108.6 287 30.7
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.1e-21 107.8 262 31.3
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 4.1e-21 105.9 235 31.1
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 3.5e-20 102.8 285 31.2
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 6.0e-20 102.1 150 40.0
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 2.3e-19 100.1 306 29.1
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 8.6e-19 98.2 298 32.2
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 8.6e-19 98.2 284 28.9
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 8.6e-19 98.2 249 31.7
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.9e-18 97.1 238 32.4
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.5e-18 96.7 99 45.5
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.6e-17 94.0 284 31.7
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.6e-17 94.0 231 33.3
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 1.6e-17 94.0 214 32.2
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 6.2e-17 92.0 278 29.1
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 1.1e-16 91.3 227 31.7
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.4e-16 90.9 214 30.8
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 3.1e-16 89.7 202 32.7
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 5.2e-16 89.0 202 32.7
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 8.9e-16 88.2 222 28.4
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.0e-15 87.0 80 50.0
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 7.5e-15 85.1 245 33.9
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 7.5e-15 85.1 254 29.1
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 2.9e-14 83.2 231 31.2
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 4.1e-13 79.3 91 42.9
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 7.1e-13 78.6 201 32.3
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.0e-11 74.7 267 24.7
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 5.1e-11 72.4 87 40.2
BcaC02g12160 Brassica carinata HOM05D001925 ORTHO05D004257 6.6e-11 72.0 98 45.9
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.4e-08 64.3 72 41.7
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 2.3e-08 63.5 70 41.4
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 8.9e-08 61.6 72 51.4
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 8.9e-08 61.6 89 39.3
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.2e-07 61.2 134 31.3
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 9.9e-07 58.2 216 26.9


User provided reference genes

Program Settings