Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 4.5e-228 794.3 410 100.0
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.9e-226 788.9 410 99.3
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.2e-222 775.4 411 97.6
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 9.1e-221 770.0 411 97.3
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 4.0e-208 728.0 414 92.8
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.0e-196 687.6 414 86.7
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.7e-195 686.0 414 87.0
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.1e-188 662.5 413 84.7
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.0e-187 660.2 415 84.8
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-187 659.8 415 84.3
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.9e-174 615.5 413 78.2
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.6e-172 609.8 414 76.3
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.4e-167 592.0 408 75.5
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.3e-166 590.1 413 75.8
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 3.8e-166 588.6 411 75.2
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 3.8e-166 588.6 411 75.2
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 4.2e-165 585.1 413 74.6
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 5.4e-165 584.7 411 74.5
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 2.1e-164 582.8 413 75.5
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.7e-164 582.4 409 75.1
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 3.5e-164 582.0 411 73.7
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 3.7e-161 572.0 412 74.0
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 3.7e-161 572.0 412 74.0
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.8e-160 569.7 357 84.3
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.5e-159 566.6 410 72.9
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 2.0e-159 566.2 409 73.3
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.0e-158 563.9 409 73.6
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.5e-151 540.0 409 71.1
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.1e-148 529.6 352 77.3
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 9.0e-144 514.2 414 65.2
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 2.0e-143 513.1 411 64.7
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 6.5e-142 508.1 401 65.8
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.1e-141 507.3 409 64.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.4e-141 506.9 403 66.0
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.2e-140 503.8 417 65.2
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.1e-140 503.1 404 63.4
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 2.7e-140 502.7 404 64.1
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 6.1e-140 501.5 354 70.3
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 7.9e-140 501.1 407 64.9
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.0e-139 500.7 414 62.1
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.8e-139 500.0 409 63.3
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 2.3e-139 499.6 414 64.7
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 3.9e-139 498.8 418 64.4
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.5e-138 496.9 410 64.1
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.5e-138 496.1 408 64.0
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.5e-138 496.1 408 64.0
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.3e-137 493.8 403 63.8
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.3e-137 493.8 406 64.5
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.7e-137 493.4 387 65.6
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.2e-137 493.0 403 63.8
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.8e-137 492.7 407 63.6
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 2.8e-137 492.7 404 63.4
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 3.7e-137 492.3 406 63.8
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.7e-137 492.3 408 62.0
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 8.2e-137 491.1 404 64.4
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.4e-136 490.3 407 63.6
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.1e-136 489.2 381 65.6
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 6.9e-136 488.0 409 64.5
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 9.1e-136 487.6 397 64.2
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.3e-134 483.8 350 69.4
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.3e-134 483.8 366 66.9
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.2e-134 483.0 410 60.5
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 2.2e-134 483.0 389 63.5
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.0e-134 481.9 357 67.8
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 6.5e-134 481.5 368 66.3
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 6.5e-134 481.5 369 65.0
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 8.5e-134 481.1 405 62.2
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.4e-133 480.3 371 66.0
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.4e-133 480.3 400 62.5
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.2e-132 477.2 400 61.8
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 2.7e-132 476.1 409 60.4
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 3.6e-132 475.7 383 63.4
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 4.7e-132 475.3 331 73.7
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.4e-131 473.8 379 65.7
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 5.1e-131 471.9 354 63.8
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.5e-130 470.3 408 61.8
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.5e-130 470.3 411 61.1
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 2.0e-130 469.9 406 61.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 9.7e-130 467.6 361 65.1
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.3e-129 467.2 398 62.6
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.3e-129 467.2 411 61.1
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.7e-129 466.8 356 64.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.8e-129 465.3 403 62.0
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.3e-129 464.9 402 61.9
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 6.3e-129 464.9 379 62.3
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.1e-128 464.2 351 62.7
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 1.1e-128 464.2 332 69.9
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-128 463.8 401 61.1
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.8e-128 463.4 403 61.8
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.8e-128 463.4 401 61.3
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 3.1e-128 462.6 382 62.3
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-127 460.7 403 61.8
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 5.9e-127 458.4 392 59.4
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 1.0e-126 457.6 350 66.3
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 1.0e-126 457.6 405 58.5
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.8e-126 455.7 430 56.7
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 3.8e-126 455.7 475 53.5
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 5.0e-126 455.3 351 65.2
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.1e-125 454.1 400 56.8
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.9e-125 453.4 430 56.7
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 3.2e-125 452.6 412 58.0
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 9.4e-125 451.1 408 58.3
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.8e-123 446.8 331 68.6
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 3.0e-123 446.0 376 60.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 3.9e-123 445.7 350 62.0
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 2.2e-121 439.9 336 64.9
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 2.8e-121 439.5 404 57.9
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.8e-120 436.8 336 64.6
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.6e-119 433.7 375 60.3
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 8.8e-115 417.9 297 69.4
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.0e-111 406.8 387 56.6
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.3e-110 404.1 307 64.2
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.2e-109 399.1 358 57.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.5e-106 390.6 292 68.8
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 4.4e-106 389.0 408 52.7
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 4.9e-105 385.6 204 98.5
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.0e-102 377.9 285 71.9
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.3e-102 376.7 341 58.1
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.2e-101 371.7 336 54.8
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-98 364.0 346 54.0
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-96 357.1 313 55.9
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.0e-95 353.6 341 52.8
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 1.7e-94 350.5 402 50.5
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 9.5e-93 344.7 319 53.6
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.2e-90 337.8 410 49.0
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.8e-83 313.9 281 60.1
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.2e-79 301.2 229 71.2
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 2.1e-79 300.4 427 45.0
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 4.4e-74 282.7 398 40.2
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 8.4e-73 278.5 336 48.8
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.2e-72 276.6 315 45.4
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.2e-72 276.6 371 41.0
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.8e-66 255.8 337 41.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.1e-64 251.5 295 43.7
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 2.1e-63 247.3 328 40.5
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.5e-63 246.5 310 40.3
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-61 241.1 300 42.3
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-61 241.1 307 39.7
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-61 240.4 309 39.8
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-61 240.0 301 41.2
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-58 231.1 217 59.9
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.4e-58 229.6 274 42.3
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.9e-57 226.1 181 61.3
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 2.3e-54 217.2 255 50.2
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 3.9e-54 216.5 157 70.7
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 3.3e-53 213.4 338 36.4
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 8.4e-49 198.7 114 90.4
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.4e-48 197.2 152 57.9
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.1e-43 180.3 325 33.8
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.2e-42 178.3 236 42.8
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-41 174.5 329 32.5
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.5e-41 172.6 315 33.3
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-40 171.4 308 33.4
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.5e-40 170.6 161 59.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.3e-40 168.7 124 73.4
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.0e-39 166.0 367 31.3
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.0e-38 163.7 313 29.7
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.1e-37 161.8 146 55.5
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.2e-32 142.5 322 28.9
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.7e-30 135.6 302 32.5
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 1.2e-26 125.2 306 32.4
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.7e-26 122.5 314 29.3
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-25 121.7 191 36.1
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-25 121.3 301 26.6
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-24 118.2 299 27.8
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 1.9e-24 117.9 83 73.5
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.5e-24 116.3 316 28.8
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 4.6e-23 113.2 77 75.3
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.1e-23 112.8 150 40.7
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.9e-23 112.5 221 31.2
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.9e-23 112.5 142 45.8
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-22 111.7 319 28.8
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.1e-19 102.1 353 26.6
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.7e-17 94.7 311 27.0
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.1e-13 82.0 301 24.9
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 6.3e-12 76.3 64 60.9
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-09 68.2 89 46.1
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.0e-09 66.6 149 31.5


User provided reference genes

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