Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 3.8e-76 288.1 146 100.0
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.1e-64 250.0 146 89.7
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 1.8e-62 242.7 146 86.3
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 2.4e-62 242.3 146 87.0
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 3.1e-62 241.9 146 87.0
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.5e-61 239.6 146 86.3
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 2.0e-61 239.2 146 85.6
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 2.0e-61 239.2 146 85.6
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 2.0e-61 239.2 146 85.6
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 4.5e-61 238.0 146 84.9
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 2.9e-60 235.3 146 83.6
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 8.4e-60 233.8 144 84.7
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 1.0e-57 226.9 145 83.4
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 4.3e-56 221.5 144 79.2
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 5.6e-56 221.1 144 79.2
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.5e-53 213.0 135 81.5
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.3e-52 209.9 146 74.7
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 8.4e-52 207.2 144 75.0
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 7.1e-51 204.1 144 73.6
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 1.4e-46 189.9 145 70.3
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 2.5e-43 179.1 144 65.3
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 2.1e-42 176.0 144 63.9
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 6.7e-41 171.0 145 62.8
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 2.2e-39 166.0 144 62.5
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 2.8e-39 165.6 145 62.8
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.4e-38 163.3 145 60.7
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 4.1e-38 161.8 141 61.7
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 4.1e-38 161.8 144 62.5
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 4.1e-38 161.8 146 58.9
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 1.2e-37 160.2 144 61.1
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.5e-37 159.8 144 61.1
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 2.6e-37 159.1 146 60.3
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 3.4e-37 158.7 144 61.1
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 3.4e-37 158.7 145 60.7
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 3.4e-37 158.7 146 60.3
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 4.5e-37 158.3 144 61.1
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 5.9e-37 157.9 145 60.0
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 5.9e-37 157.9 145 59.3
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 5.9e-37 157.9 144 61.1
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 5.9e-37 157.9 144 61.8
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.0e-36 157.1 144 58.3
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 1.3e-36 156.8 144 59.7
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 1.3e-36 156.8 144 61.1
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.7e-36 156.4 145 59.3
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 1.7e-36 156.4 144 61.1
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 3.8e-36 155.2 144 59.0
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 3.8e-36 155.2 144 58.3
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 6.5e-36 154.5 145 58.6
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 6.5e-36 154.5 145 62.1
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 6.5e-36 154.5 145 58.6
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 6.5e-36 154.5 144 56.9
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 8.5e-36 154.1 144 59.7
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.1e-35 153.7 146 57.5
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.1e-35 153.7 145 57.2
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.1e-35 153.7 144 60.4
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.4e-35 153.3 146 57.5
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 1.4e-35 153.3 145 60.0
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 1.9e-35 152.9 150 58.0
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 2.5e-35 152.5 144 59.7
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 2.5e-35 152.5 144 56.9
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 3.2e-35 152.1 144 56.9
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 9.4e-35 150.6 144 59.0
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.2e-34 150.2 146 56.2
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.2e-34 150.2 144 56.2
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 2.1e-34 149.4 148 60.1
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 3.6e-34 148.7 145 58.6
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.6e-34 148.7 145 58.6
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.6e-34 148.7 145 58.6
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 4.6e-34 148.3 147 56.5
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 4.6e-34 148.3 144 56.2
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 7.9e-34 147.5 145 58.6
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 7.9e-34 147.5 144 54.9
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 1.0e-33 147.1 145 55.9
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.0e-33 147.1 145 55.9
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.4e-33 146.7 145 57.2
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.8e-33 146.4 145 57.9
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 1.8e-33 146.4 147 55.8
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 2.3e-33 146.0 144 55.6
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.3e-33 146.0 145 57.2
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 6.7e-33 144.4 146 57.5
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 6.7e-33 144.4 144 56.2
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 1.1e-32 143.7 147 55.1
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.5e-32 143.3 144 56.2
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 1.5e-32 143.3 144 55.6
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 3.3e-32 142.1 147 55.1
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 3.3e-32 142.1 146 55.5
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 4.3e-32 141.7 146 56.8
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 4.3e-32 141.7 145 55.2
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 7.4e-32 141.0 144 54.9
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 7.4e-32 141.0 144 56.2
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 7.4e-32 141.0 146 53.4
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 2.8e-31 139.0 154 51.9
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 2.8e-31 139.0 125 61.6
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 2.8e-31 139.0 146 55.5
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 2.8e-31 139.0 151 55.0
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 4.8e-31 138.3 144 54.2
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.1e-30 137.1 145 54.5
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 1.1e-30 137.1 144 55.6
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.4e-30 136.7 147 52.4
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 3.1e-30 135.6 114 61.4
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 4.1e-30 135.2 145 53.8
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 6.9e-30 134.4 146 52.7
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.0e-29 132.9 160 50.6
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 2.6e-29 132.5 144 52.8
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 3.4e-29 132.1 146 53.4
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 7.7e-29 131.0 153 52.3
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 1.0e-28 130.6 144 50.0
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 5.0e-28 128.3 113 61.1
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 7.2e-27 124.4 118 61.0
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 4.7e-26 121.7 152 50.0
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 7.9e-26 120.9 146 46.6
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 7.9e-26 120.9 109 58.7
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 3.9e-25 118.6 210 39.0
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 6.7e-25 117.9 114 57.0
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 8.8e-25 117.5 109 58.7
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 1.1e-24 117.1 148 51.4
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 2.6e-24 115.9 134 50.7
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 2.6e-24 115.9 139 46.0
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 3.7e-23 112.1 127 49.6
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 4.8e-23 111.7 97 63.9
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 7.0e-22 107.8 89 62.9
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 9.1e-22 107.5 108 56.5
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 2.2e-20 102.8 96 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 3.8e-20 102.1 113 50.4
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 8.5e-20 100.9 88 59.1
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.4e-19 100.1 108 51.9
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 3.2e-19 99.0 145 44.1
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 4.2e-19 98.6 96 56.2
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 4.7e-18 95.1 88 58.0
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 6.1e-18 94.7 96 50.0
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.3e-16 89.0 88 52.3
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 3.3e-16 89.0 76 61.8
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 9.7e-16 87.4 96 47.9
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 1.1e-14 84.0 77 58.4
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.1e-14 84.0 148 43.2
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 2.9e-12 75.9 69 59.4
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 6.5e-12 74.7 81 55.6
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.8e-09 66.6 72 55.6
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.3e-08 62.4 40 75.0
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 1.4e-06 57.0 101 34.7
Ah.14g084810 Amaranthus hybridus HOM05D002686 ORTHO05D003222 2.4e-06 56.2 98 36.7
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 3.1e-06 55.8 98 34.7
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 3.1e-06 55.8 98 34.7


User provided reference genes

Program Settings