Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29370 Brassica carinata HOM05D007302 ORTHO05D009191 3.3e-63 245.0 133 100.0
C04p70980 Brassica napus HOM05D007302 ORTHO05D009191 3.3e-63 245.0 133 100.0
BolC4t28601H Brassica oleracea HOM05D007302 ORTHO05D009191 3.3e-63 245.0 133 100.0
A04p33280 Brassica napus HOM05D007302 ORTHO05D009191 5.9e-60 234.2 133 94.7
BraA04t18789Z Brassica rapa HOM05D007302 ORTHO05D009191 5.9e-60 234.2 133 94.7
AT2G44360 Arabidopsis thaliana HOM05D007302 ORTHO05D009191 7.7e-52 207.2 136 85.3
Carub.0004s2694 Capsella rubella HOM05D007302 ORTHO05D009191 3.8e-51 204.9 137 84.7
Thhalv10001676m.g Eutrema salsugineum HOM05D007302 ORTHO05D009191 5.0e-51 204.5 141 82.3
Sp4g26420 Schrenkiella parvula HOM05D007302 ORTHO05D009191 3.2e-50 201.8 118 90.7
AL4G43340 Arabidopsis lyrata HOM05D007302 ORTHO05D009191 1.0e-48 196.8 130 83.8
CARHR139520 Cardamine hirsuta HOM05D007302 ORTHO05D009191 1.8e-48 196.1 136 82.4
Aa31LG1G25940 Aethionema arabicum HOM05D007302 ORTHO05D009191 3.0e-48 195.3 116 89.7
THA.LOC104817151 Tarenaya hassleriana HOM05D007302 ORTHO05D009191 2.0e-44 182.6 118 81.4
Prupe.2G003100 Prunus persica HOM05D007302 ORTHO05D009191 5.9e-44 181.0 116 81.9
CANSAT11G0176 Cannabis sativa HOM05D007302 ORTHO05D009191 1.7e-43 179.5 120 81.7
MD07G1001600 Malus domestica HOM05D007302 ORTHO05D009191 5.0e-43 177.9 116 80.2
Cfa010688 Carpinus fangiana HOM05D007302 ORTHO05D009191 1.1e-42 176.8 116 81.9
Haze_03286 Corylus avellana HOM05D007302 ORTHO05D009191 1.4e-42 176.4 116 81.9
QL04p001433 Quercus lobata HOM05D007302 ORTHO05D009191 1.4e-42 176.4 116 81.9
Cpa.g.sc189.6 Carica papaya HOM05D007302 ORTHO05D009191 3.2e-42 175.3 115 81.7
FAN03G0504 Fragaria x ananassa HOM05D007302 ORTHO05D009191 3.2e-42 175.3 116 80.2
Glyma.15G268700 Glycine max HOM05D007302 ORTHO05D009191 4.2e-42 174.9 116 80.2
VMungo1080G0568 Vigna mungo HOM05D007302 ORTHO05D009191 4.2e-42 174.9 116 80.2
Manes.10G151800 Manihot esculenta HOM05D007302 ORTHO05D009191 5.5e-42 174.5 114 82.5
MBI08_g23101_MAGBIO Magnolia biondii HOM05D007302 ORTHO05D009191 7.2e-42 174.1 117 78.6
RcHm_v2.0_Chr1g0313291 Rosa chinensis HOM05D007302 ORTHO05D009191 9.4e-42 173.7 113 81.4
TWI09G1618 Tripterygium wilfordii HOM05D007302 ORTHO05D009191 1.2e-41 173.3 116 79.3
Lalb_Chr25g0283591 Lupinus albus HOM05D007302 ORTHO05D009191 1.6e-41 172.9 128 74.2
TAR369G0332 Trochodendron aralioides HOM05D007302 ORTHO05D009191 3.6e-41 171.8 116 77.6
TAR369G0850 Trochodendron aralioides HOM05D007302 ORTHO05D009191 3.6e-41 171.8 116 77.6
GSVIVG01001360001 Vitis vinifera HOM05D007302 ORTHO05D009191 4.7e-41 171.4 116 76.7
Ca_02882_v3 Cicer arietinum L. HOM05D007302 ORTHO05D009191 8.0e-41 170.6 131 73.3
FvH4_7g00100 Fragaria vesca HOM05D007302 ORTHO05D009191 1.0e-40 170.2 106 84.9
Medtr2g061420 Medicago truncatula HOM05D007302 ORTHO05D009191 1.0e-40 170.2 127 74.0
Potri.001G230100 Populus trichocarpa HOM05D007302 ORTHO05D009191 1.4e-40 169.9 114 79.8
DCAR_015712 Daucus carota HOM05D007302 ORTHO05D009191 2.3e-40 169.1 127 72.4
TPR.G16161 Trifolium pratense HOM05D007302 ORTHO05D009191 2.3e-40 169.1 131 73.3
Ciclev10033063m.g Citrus clementina HOM05D007302 ORTHO05D009191 3.0e-40 168.7 126 73.8
Atru.chr11.2701 Acer truncatum HOM05D007302 ORTHO05D009191 3.9e-40 168.3 131 73.3
Actinidia05847 Actinidia chinensis HOM05D007302 ORTHO05D009191 5.2e-40 167.9 124 75.0
CiPaw.16G067000 Carya illinoinensis HOM05D007302 ORTHO05D009191 1.1e-39 166.8 107 81.3
CsaV3_7G031460 Cucumis sativus L. HOM05D007302 ORTHO05D009191 1.5e-39 166.4 123 71.5
Sed0011752 Sechium edule HOM05D007302 ORTHO05D009191 1.5e-39 166.4 116 74.1
Eucgr.G03411 Eucalyptus grandis HOM05D007302 ORTHO05D009191 3.3e-39 165.2 112 77.7
PSO384G4593 Papaver somniferum HOM05D007302 ORTHO05D009191 4.4e-39 164.9 116 75.9
Psat1g127480 Pisum sativum HOM05D007302 ORTHO05D009191 4.4e-39 164.9 127 71.7
arahy.Tifrunner.gnm1.ann1.Z7X15P Arachis hypogaea HOM05D007302 ORTHO05D009191 5.7e-39 164.5 113 77.0
PSO339G0269 Papaver somniferum HOM05D007302 ORTHO05D009191 5.7e-39 164.5 116 75.9
Phvul.005G041100 Phaseolus vulgaris HOM05D007302 ORTHO05D009191 5.7e-39 164.5 113 77.0
arahy.Tifrunner.gnm1.ann1.5U19IL Arachis hypogaea HOM05D007302 ORTHO05D009191 7.4e-39 164.1 128 71.1
Lsat_1_v5_gn_1_87261 Lactuca sativa HOM05D007302 ORTHO05D009191 9.7e-39 163.7 117 74.4
Lj3g0023486 Lotus japonicus HOM05D007302 ORTHO05D009191 9.7e-39 163.7 131 69.5
Lj6g0025867 Lotus japonicus HOM05D007302 ORTHO05D009191 9.7e-39 163.7 131 69.5
QL04p001298 Quercus lobata HOM05D007302 ORTHO05D009191 1.7e-38 162.9 140 67.9
Thecc.01G416400 Theobroma cacao HOM05D007302 ORTHO05D009191 2.2e-38 162.5 129 71.3
vmacro13612 Vaccinium macrocarpon HOM05D007302 ORTHO05D009191 2.8e-38 162.2 113 77.0
ClCG09G003750 Citrullus lanatus HOM05D007302 ORTHO05D009191 6.3e-38 161.0 115 76.5
Actinidia31711 Actinidia chinensis HOM05D007302 ORTHO05D009191 8.2e-38 160.6 122 72.1
Duzib268G0295 Durio zibethinus HOM05D007302 ORTHO05D009191 1.1e-37 160.2 112 77.7
Gohir.D08G037201 Gossypium hirsutum HOM05D007302 ORTHO05D009191 1.4e-37 159.8 121 72.7
Gorai.004G035200 Gossypium raimondii HOM05D007302 ORTHO05D009191 1.4e-37 159.8 121 72.7
Aqoxy1G00038 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 7.0e-37 157.5 116 71.6
FAN06G3306 Fragaria x ananassa HOM05D007302 ORTHO05D009191 7.0e-37 157.5 106 80.2
ECA248G3756 Erigeron canadensis HOM05D007302 ORTHO05D009191 9.1e-37 157.1 123 69.9
Migut.N01659 Erythranthe guttata HOM05D007302 ORTHO05D009191 1.2e-36 156.8 112 73.2
Migut.O00474 Erythranthe guttata HOM05D007302 ORTHO05D009191 1.2e-36 156.8 112 73.2
MSTRG.28098 Avicennia marina HOM05D007302 ORTHO05D009191 1.6e-36 156.4 112 75.9
Nn2g15684 Nelumbo nucifera HOM05D007302 ORTHO05D009191 1.6e-36 156.4 116 72.4
MELO3C023508.2 Cucumis melo HOM05D007302 ORTHO05D009191 2.6e-36 155.6 150 60.0
Rhsim07G0050000 Rhododendron simsii HOM05D007302 ORTHO05D009191 2.6e-36 155.6 112 75.9
FAN10G3108 Fragaria x ananassa HOM05D007302 ORTHO05D009191 3.5e-36 155.2 106 79.2
Gohir.A08G026680 Gossypium hirsutum HOM05D007302 ORTHO05D009191 3.5e-36 155.2 121 71.1
Sopen10g014540 Solanum pennellii HOM05D007302 ORTHO05D009191 3.5e-36 155.2 118 71.2
Cc02_g26960 Coffea canephora HOM05D007302 ORTHO05D009191 7.7e-36 154.1 138 66.7
Peaxi162Scf00245g01315 Petunia axillaris HOM05D007302 ORTHO05D009191 1.0e-35 153.7 110 74.5
PGSC0003DMG400028766 Solanum tuberosum HOM05D007302 ORTHO05D009191 1.0e-35 153.7 120 70.0
Solyc10g045350.2 Solanum lycopersicum HOM05D007302 ORTHO05D009191 5.0e-35 151.4 135 64.4
HanXRQChr15g0480631 Helianthus annuus HOM05D007302 ORTHO05D009191 1.9e-34 149.4 113 73.5
CSS0004707 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 3.2e-34 148.7 108 75.9
Nn7g36009 Nelumbo nucifera HOM05D007302 ORTHO05D009191 3.2e-34 148.7 123 69.1
Sabra16G0137900 Salix brachista HOM05D007302 ORTHO05D009191 5.5e-34 147.9 109 76.1
SalBow4G1665 Salvia bowleyana HOM05D007302 ORTHO05D009191 9.4e-34 147.1 124 68.5
SalBow4G2255 Salvia bowleyana HOM05D007302 ORTHO05D009191 9.4e-34 147.1 124 68.5
CSS0001542 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 1.2e-33 146.7 108 75.9
unitig_736.g22290 Utricularia gibba HOM05D007302 ORTHO05D009191 3.6e-33 145.2 109 71.6
Actinidia25680 Actinidia chinensis HOM05D007302 ORTHO05D009191 4.7e-33 144.8 109 71.6
Sc11g0006270 Simmondsia chinensis HOM05D007302 ORTHO05D009191 8.0e-33 144.1 117 65.0
CDE07G1496 Ceratophyllum demersum HOM05D007302 ORTHO05D009191 2.8e-30 135.6 123 56.9
Hund06578 Selenicereus undatus HOM05D007302 ORTHO05D009191 8.3e-30 134.0 123 60.2
SGA_v2.0_scaffold95G28773 Striga asiatica HOM05D007302 ORTHO05D009191 1.0e-27 127.1 117 65.8
ATR0807G228 Amborella trichopoda HOM05D007302 ORTHO05D009191 1.7e-27 126.3 102 66.7
EL10Ac9g21938 Beta vulgaris HOM05D007302 ORTHO05D009191 1.7e-27 126.3 110 64.5
Dinv43937 Davidia involucrata HOM05D007302 ORTHO05D009191 1.2e-25 120.2 122 60.7
COL.COLO4_25061 Corchorus olitorius HOM05D007302 ORTHO05D009191 8.0e-25 117.5 108 65.7
CSS0017005 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 1.0e-24 117.1 115 62.6
SEGI_27997 Sequoiadendron giganteum HOM05D007302 ORTHO05D009191 1.4e-24 116.7 107 58.9
AUR62011558 Chenopodium quinoa HOM05D007302 ORTHO05D009191 3.4e-23 112.1 116 56.0
HPP92_022445 Vanilla planifolia HOM05D007302 ORTHO05D009191 3.4e-23 112.1 85 70.6
AUR62016377 Chenopodium quinoa HOM05D007302 ORTHO05D009191 1.7e-22 109.8 112 58.0
CSS0014571 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 2.9e-19 99.0 112 57.1
Pp3c17_19080 Physcomitrium patens HOM05D007302 ORTHO05D009191 4.2e-18 95.1 118 44.9
Oeu003126.2 Olea europaea HOM05D007302 ORTHO05D009191 7.2e-18 94.4 62 74.2
CBR_g22319 Chara braunii HOM05D000019 ORTHO05D000048 8.9e-16 87.4 102 41.2
DCAR_024994 Daucus carota HOM05D007302 ORTHO05D009191 2.6e-15 85.9 108 50.9
Mapoly0007s0266 Marchantia polymorpha HOM05D007302 ORTHO05D009191 1.3e-14 83.6 100 47.0
Os09g0553800 Oryza sativa ssp. japonica HOM05D007302 ORTHO05D009191 1.8e-13 79.7 76 55.3
MD05G1005700 Malus domestica HOM05D007302 ORTHO05D009191 1.7e-11 73.2 51 76.5
BcaB01g03316 Brassica carinata HOM05D007302 ORTHO05D009191 3.1e-08 62.4 51 64.7
MD15G1336100 Malus domestica HOM05D007302 ORTHO05D009191 2.2e-06 56.2 59 59.3


User provided reference genes

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