Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.2e-170 603.2 344 100.0
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 2.4e-166 589.0 344 97.7
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 1.0e-164 583.6 344 95.6
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 3.9e-164 581.6 345 96.8
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 2.4e-158 562.4 341 94.7
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 1.3e-156 556.6 348 88.2
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.5e-155 553.1 344 84.3
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.0e-152 542.7 306 88.6
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 7.6e-152 540.8 306 88.2
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.1e-150 537.0 306 87.6
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.1e-150 537.0 344 82.0
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 7.1e-150 534.3 306 88.9
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.6e-149 533.1 306 88.6
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 3.5e-149 531.9 302 87.7
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.7e-148 529.6 306 86.6
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 4.3e-147 525.0 315 84.8
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 7.3e-147 524.2 306 85.0
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.6e-133 479.9 347 79.5
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.3e-130 470.3 299 77.9
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 5.5e-126 454.9 305 74.1
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-121 440.7 350 80.3
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 9.0e-121 437.6 308 70.1
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 4.5e-120 435.3 306 71.9
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 3.8e-119 432.2 296 72.3
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.1e-118 430.6 304 72.0
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.1e-118 430.6 297 71.0
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.9e-118 429.9 297 71.0
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 3.2e-118 429.1 305 70.5
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 2.7e-117 426.0 306 68.6
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 1.3e-116 423.7 297 70.4
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.3e-116 422.9 297 71.0
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.9e-116 422.2 297 71.0
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 8.7e-116 421.0 297 69.4
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.1e-115 420.6 300 70.0
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.9e-115 419.9 304 68.1
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.9e-115 419.9 304 68.1
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 4.3e-115 418.7 296 69.9
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 5.7e-115 418.3 325 66.5
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 3.7e-114 415.6 297 68.4
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.8e-114 415.2 306 69.9
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 6.3e-114 414.8 309 65.7
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 8.2e-114 414.5 297 70.7
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.4e-113 412.9 297 68.7
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.1e-113 412.5 297 69.4
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 5.3e-113 411.8 304 67.8
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 9.0e-113 411.0 297 69.7
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.2e-112 410.6 297 67.0
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.5e-112 410.2 297 70.4
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 2.6e-112 409.5 297 67.7
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 3.4e-112 409.1 299 66.9
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 4.5e-112 408.7 304 65.8
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 4.5e-112 408.7 304 65.8
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.0e-111 407.5 306 65.7
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.0e-111 407.5 297 69.4
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.3e-111 407.1 306 66.3
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 1.7e-111 406.8 304 65.8
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.7e-111 406.8 298 67.4
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 3.8e-111 405.6 304 66.8
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.0e-111 405.2 306 69.3
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 6.5e-111 404.8 308 65.3
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 6.5e-111 404.8 297 68.0
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 8.5e-111 404.4 297 67.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.4e-110 403.7 310 66.8
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.9e-110 403.3 297 68.7
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 2.5e-110 402.9 304 64.8
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 7.2e-110 401.4 304 64.5
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.4e-110 401.0 297 68.7
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 1.2e-109 400.6 297 66.7
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 2.1e-109 399.8 297 66.7
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.1e-109 399.8 297 66.7
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 4.6e-109 398.7 299 64.5
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 6.1e-109 398.3 309 66.0
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.8e-108 396.7 296 65.9
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.8e-108 396.7 296 65.9
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 3.9e-108 395.6 299 65.9
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 3.9e-108 395.6 298 63.8
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 6.7e-108 394.8 297 66.7
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 8.8e-108 394.4 300 66.0
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.5e-107 393.7 297 68.0
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.3e-107 392.5 296 64.9
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 9.7e-107 391.0 303 64.4
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.7e-106 390.2 303 64.0
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 2.8e-106 389.4 297 65.3
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 4.8e-106 388.7 296 65.9
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 8.2e-106 387.9 315 61.9
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.2e-106 387.9 299 63.2
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.2e-106 387.9 299 63.2
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.4e-105 387.1 291 66.7
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.8e-105 386.7 309 62.8
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 4.1e-105 385.6 300 65.3
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.2e-104 384.0 297 64.6
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 7.7e-104 381.3 299 63.5
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.1e-102 377.5 297 63.0
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 1.4e-102 377.1 299 60.5
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.9e-102 376.7 302 63.2
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 3.2e-102 375.9 297 63.6
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 4.2e-102 375.6 299 65.2
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 5.5e-102 375.2 337 57.9
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.2e-102 374.8 302 62.9
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 9.4e-102 374.4 360 54.2
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.6e-101 373.6 297 62.6
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.7e-101 372.9 299 62.2
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.7e-101 372.1 302 62.9
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.6e-99 366.3 309 60.2
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.6e-96 357.1 271 64.9
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.3e-95 354.0 300 59.3
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 2.1e-93 346.7 269 63.2
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 8.0e-93 344.7 306 61.1
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 8.0e-93 344.7 331 55.6
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 3.3e-91 339.3 299 62.2
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 3.3e-91 339.3 299 58.5
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 5.7e-91 338.6 299 55.2
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 5.9e-88 328.6 295 59.0
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 9.4e-86 321.2 292 56.2
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.0e-84 317.8 303 55.8
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 7.0e-81 305.1 310 51.3
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.3e-79 300.8 272 55.5
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.4e-75 286.2 252 57.5
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.0e-71 274.6 273 51.3
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-70 270.8 202 67.8
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 1.0e-68 264.6 220 62.3
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 2.6e-67 260.0 350 42.3
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.0e-63 248.1 204 64.7
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.1e-62 244.6 293 41.0
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 2.8e-61 240.0 296 43.6
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.2e-59 234.6 293 39.9
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 5.8e-59 232.3 294 39.5
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 1.4e-57 227.6 290 45.9
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.3e-55 221.1 165 64.8
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 5.2e-52 209.1 262 40.8
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 4.7e-45 186.0 181 51.9
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.2e-43 181.4 233 45.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.4e-41 173.7 126 71.4
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.4e-41 173.7 126 71.4
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 1.8e-36 157.5 125 72.0
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 2.6e-35 153.7 84 83.3
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 4.9e-34 149.4 73 95.9
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 2.4e-33 147.1 285 31.9
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.7e-32 143.7 86 82.6
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 1.7e-31 141.0 76 88.2
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.1e-28 131.7 117 66.7
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.4e-28 130.6 116 53.4
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.9e-25 120.9 105 58.1
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.2e-25 120.2 68 79.4
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 3.3e-22 110.2 58 93.1
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 5.3e-20 102.8 101 53.5
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 6.9e-20 102.4 62 77.4
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 4.5e-19 99.8 89 52.8
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.4e-17 94.0 82 53.7
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 1.6e-16 91.3 92 57.6
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.1e-14 85.1 180 33.3
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.0e-10 72.0 47 70.2
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 4.2e-09 66.6 48 62.5
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.3e-06 57.0 60 48.3


User provided reference genes

Program Settings