Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 3.4e-132 474.9 228 100.0
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 3.9e-128 461.5 228 96.5
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 3.9e-128 461.5 228 96.5
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.9e-127 459.1 228 95.6
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 4.3e-127 458.0 228 95.2
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 3.3e-119 431.8 228 92.1
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.1e-110 402.5 228 82.0
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 6.2e-110 401.0 202 94.1
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.0e-108 396.0 228 81.1
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.1e-106 390.2 228 81.1
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.5e-103 379.8 228 77.2
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 5.6e-103 377.9 228 78.5
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 4.0e-101 371.7 229 76.4
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.1e-97 359.4 220 77.3
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.8e-83 312.0 203 69.5
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 8.4e-83 310.8 204 69.6
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.7e-81 305.8 197 71.6
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 3.9e-80 302.0 223 65.0
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 2.2e-78 296.2 203 66.0
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 8.2e-78 294.3 204 63.7
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 8.2e-78 294.3 204 64.2
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 1.1e-77 293.9 201 65.2
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 1.8e-77 293.1 204 64.2
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 1.8e-77 293.1 201 64.2
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 5.3e-77 291.6 204 63.7
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.2e-76 290.4 218 58.7
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 1.5e-76 290.0 201 64.2
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 1.5e-76 290.0 204 63.2
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 1.5e-76 290.0 201 62.7
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 1.5e-76 290.0 202 63.4
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 3.4e-76 288.9 198 69.2
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 3.4e-76 288.9 198 69.2
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 4.5e-76 288.5 194 70.6
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 5.9e-76 288.1 201 63.2
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 7.7e-76 287.7 201 65.2
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 2.9e-75 285.8 211 61.1
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 2.9e-75 285.8 208 62.5
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 5.0e-75 285.0 216 60.6
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 6.5e-75 284.6 198 68.2
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 6.5e-75 284.6 198 68.2
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 1.4e-74 283.5 204 63.2
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.9e-74 283.1 221 57.9
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 1.9e-74 283.1 205 62.4
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 2.5e-74 282.7 204 63.2
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 7.2e-74 281.2 204 61.8
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 1.2e-73 280.4 201 63.2
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 1.6e-73 280.0 203 62.6
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 2.7e-73 279.3 201 64.7
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 3.6e-73 278.9 190 66.3
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 4.6e-73 278.5 204 61.8
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 1.8e-72 276.6 216 58.8
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 2.3e-72 276.2 212 57.5
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.0e-72 275.8 236 54.7
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 3.9e-72 275.4 194 62.4
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 8.8e-72 274.2 206 60.2
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.1e-71 273.9 201 62.7
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.1e-71 273.9 226 58.4
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 1.1e-71 273.9 190 65.3
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.1e-71 273.9 208 61.5
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 1.5e-71 273.5 217 56.2
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 2.0e-71 273.1 204 59.3
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 2.5e-71 272.7 203 61.6
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 7.4e-71 271.2 181 66.3
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 9.7e-71 270.8 216 56.0
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.3e-70 270.4 196 60.7
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 1.7e-70 270.0 194 62.4
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 2.2e-70 269.6 214 57.0
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 2.8e-70 269.2 179 72.1
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 4.8e-70 268.5 220 56.8
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 6.3e-70 268.1 194 62.9
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-69 267.3 206 58.7
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.4e-69 266.9 217 55.8
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.4e-69 266.9 194 60.8
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 2.4e-69 266.2 206 58.7
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 2.4e-69 266.2 218 56.4
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 2.4e-69 266.2 194 59.3
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 3.1e-69 265.8 217 58.5
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.1e-69 265.4 209 56.9
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 5.3e-69 265.0 217 54.8
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.3e-69 265.0 206 58.3
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 6.9e-69 264.6 201 60.2
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 6.9e-69 264.6 206 57.8
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 6.9e-69 264.6 206 57.8
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 1.5e-68 263.5 216 55.6
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 3.4e-68 262.3 206 57.3
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 3.4e-68 262.3 202 58.4
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 3.4e-68 262.3 199 59.3
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 3.4e-68 262.3 201 61.2
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.0e-67 260.8 209 56.5
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.3e-67 260.4 188 63.8
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.8e-67 258.8 206 56.3
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 3.8e-67 258.8 217 55.3
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 3.8e-67 258.8 217 55.8
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 6.5e-67 258.1 217 54.8
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.4e-66 256.9 194 59.8
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 1.4e-66 256.9 194 58.8
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 7.2e-66 254.6 200 57.0
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 1.6e-65 253.4 216 55.6
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 4.7e-65 251.9 217 52.5
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 6.1e-65 251.5 196 58.2
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 1.8e-64 250.0 217 53.9
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.3e-64 249.6 194 56.7
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 2.3e-64 249.6 196 57.7
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 3.9e-64 248.8 196 57.1
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 3.9e-64 248.8 186 59.7
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.9e-64 248.8 222 52.7
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.1e-64 248.4 199 55.3
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 6.7e-64 248.1 168 67.9
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 6.7e-64 248.1 192 59.4
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 8.8e-64 247.7 236 51.3
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 1.5e-63 246.9 211 55.0
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 2.8e-62 242.7 196 55.6
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 3.1e-61 239.2 195 56.4
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 5.3e-61 238.4 197 59.9
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.0e-60 236.5 208 51.4
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 7.7e-60 234.6 222 52.3
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 5.0e-59 231.9 203 51.7
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 5.0e-59 231.9 204 53.9
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 6.5e-59 231.5 193 56.0
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 8.5e-59 231.1 253 45.8
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 8.5e-59 231.1 188 54.3
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.5e-58 230.3 203 54.7
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 5.5e-58 228.4 220 60.9
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-57 226.9 212 60.4
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.0e-56 224.2 187 56.7
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.4e-56 223.8 194 54.1
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 6.7e-56 221.5 234 45.3
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 2.2e-54 216.5 206 59.7
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 3.7e-54 215.7 194 51.0
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 8.2e-54 214.5 150 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 1.1e-53 214.2 191 51.3
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 7.0e-53 211.5 192 51.6
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-52 210.3 177 57.1
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 2.5e-50 203.0 180 61.7
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 5.5e-50 201.8 200 49.0
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.1e-49 199.9 149 57.0
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 4.0e-48 195.7 151 61.6
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 6.8e-48 194.9 201 48.3
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 1.4e-45 187.2 144 59.0
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 7.0e-45 184.9 162 58.0
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 2.2e-43 179.9 181 47.0
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.9e-43 179.5 119 69.7
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 8.0e-41 171.4 121 61.2
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 2.8e-38 162.9 111 65.8
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.6e-33 147.1 196 41.3
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-31 141.0 75 92.0
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 2.2e-30 136.7 205 38.5
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 4.6e-28 129.0 184 47.3
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 1.3e-27 127.5 201 35.8
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 5.0e-27 125.6 156 46.2
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-26 124.4 149 47.7
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.7e-25 119.0 96 54.2
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 1.0e-24 117.9 87 55.2
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.4e-24 117.5 81 58.0
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.4e-23 112.8 81 60.5
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.3e-22 110.9 81 59.3
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.7e-22 109.4 70 70.0
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 8.3e-22 108.2 79 60.8
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 1.1e-21 107.8 213 33.3
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.6e-20 102.4 77 57.1
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.0e-19 99.8 92 50.0
C08p38820 Brassica napus HOM05D000481 ORTHO05D000471 2.0e-15 87.0 85 58.8
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 2.0e-15 87.0 44 90.9
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 7.5e-15 85.1 56 58.9
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 6.4e-14 82.0 148 31.8
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.4e-14 82.0 74 45.9
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 2.7e-12 76.6 162 30.2
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.3e-06 57.8 38 63.2


User provided reference genes

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