Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 7.3e-86 320.5 156 100.0
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 7.3e-86 320.5 156 100.0
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 3.3e-62 241.9 180 73.3
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 2.8e-61 238.8 196 69.4
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 2.8e-61 238.8 196 69.4
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 2.2e-50 202.6 194 56.7
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.4e-49 199.1 193 56.0
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.2e-48 196.8 195 55.9
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 6.0e-48 194.5 200 56.5
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 8.7e-47 190.7 195 54.4
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 2.2e-42 176.0 193 50.8
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 2.5e-41 172.6 186 52.2
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.9e-38 162.9 189 52.4
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.9e-38 162.9 189 52.4
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.9e-38 162.9 189 52.4
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 5.7e-38 161.4 185 53.0
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 7.4e-38 161.0 185 52.4
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 1.2e-35 153.7 194 51.0
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.7e-34 149.8 180 50.6
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 3.2e-33 145.6 186 46.8
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 9.4e-33 144.1 185 45.4
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.6e-32 143.3 186 45.7
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.6e-32 143.3 186 45.7
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.6e-32 143.3 189 46.0
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 2.1e-32 142.9 188 46.3
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 2.1e-32 142.9 188 46.3
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.1e-32 142.9 186 46.2
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 2.1e-32 142.9 189 45.0
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 2.7e-32 142.5 185 44.9
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 3.6e-32 142.1 185 43.2
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 3.6e-32 142.1 187 44.4
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 7.9e-32 141.0 184 47.3
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.0e-31 140.6 182 44.5
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 3.0e-31 139.0 186 46.2
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 3.0e-31 139.0 187 44.9
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 3.0e-31 139.0 186 45.7
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 3.9e-31 138.7 183 43.7
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 3.9e-31 138.7 191 44.0
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 5.1e-31 138.3 183 45.4
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 6.7e-31 137.9 190 44.2
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 8.8e-31 137.5 183 45.4
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.1e-30 137.1 183 43.2
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.0e-30 136.3 183 45.9
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 2.5e-30 136.0 171 47.4
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 2.5e-30 136.0 186 45.7
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 3.3e-30 135.6 187 43.3
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 4.3e-30 135.2 198 42.4
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 5.7e-30 134.8 186 46.2
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 5.7e-30 134.8 187 41.7
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 5.7e-30 134.8 187 42.8
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 5.7e-30 134.8 187 42.8
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 7.4e-30 134.4 198 41.9
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 7.4e-30 134.4 193 42.5
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 7.4e-30 134.4 184 44.0
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 9.7e-30 134.0 187 42.8
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 9.7e-30 134.0 185 45.9
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 2.2e-29 132.9 186 43.0
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 2.8e-29 132.5 184 41.3
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 3.7e-29 132.1 178 43.8
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 3.7e-29 132.1 188 45.7
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 3.7e-29 132.1 192 43.8
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 8.2e-29 131.0 183 43.2
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 8.2e-29 131.0 194 42.8
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.1e-28 130.6 197 41.1
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.1e-28 130.6 189 43.9
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.1e-28 130.6 194 43.3
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 1.1e-28 130.6 194 44.3
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.8e-28 129.8 159 46.5
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.8e-28 129.8 178 44.4
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 1.8e-28 129.8 179 43.6
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 2.4e-28 129.4 187 44.9
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 3.1e-28 129.0 181 43.6
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 3.1e-28 129.0 188 42.0
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 4.1e-28 128.6 188 42.6
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 4.1e-28 128.6 192 42.2
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 5.3e-28 128.3 188 43.6
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 5.3e-28 128.3 188 42.0
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 5.3e-28 128.3 188 42.0
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 6.9e-28 127.9 202 40.6
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 6.9e-28 127.9 188 41.5
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 9.1e-28 127.5 188 41.5
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 1.2e-27 127.1 179 44.7
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.2e-27 127.1 181 43.1
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.5e-27 126.7 179 43.0
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 2.0e-27 126.3 182 44.0
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 3.4e-27 125.6 190 43.2
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 3.4e-27 125.6 144 50.0
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 4.5e-27 125.2 181 43.6
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 1.0e-26 124.0 180 43.3
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 1.3e-26 123.6 182 42.3
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.7e-26 123.2 181 42.0
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.7e-26 123.2 181 43.1
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 2.2e-26 122.9 97 69.1
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 2.9e-26 122.5 191 40.8
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 2.9e-26 122.5 178 40.4
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 3.8e-26 122.1 182 42.9
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 3.8e-26 122.1 180 43.3
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 6.5e-26 121.3 179 41.3
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 8.5e-26 120.9 188 41.0
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 2.5e-25 119.4 183 40.4
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 2.5e-25 119.4 179 44.7
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 5.5e-25 118.2 184 41.8
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 9.4e-25 117.5 177 41.2
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.0e-23 114.0 189 36.0
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.4e-23 113.6 189 37.6
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 1.5e-22 110.2 177 40.7
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 9.7e-22 107.5 191 40.8
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 2.8e-21 105.9 181 40.9
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 4.8e-21 105.1 137 46.7
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 4.8e-21 105.1 182 41.2
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 6.3e-21 104.8 115 52.2
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 8.2e-21 104.4 139 47.5
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.4e-20 103.6 173 38.7
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.4e-20 103.6 177 43.5
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 5.0e-18 95.1 54 85.2
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 6.5e-18 94.7 152 38.2
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.6e-16 90.1 150 40.7
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 2.3e-15 86.3 149 38.9
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 8.8e-15 84.3 67 62.7
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.1e-14 84.0 150 38.7
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 1.5e-14 83.6 123 40.7
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.0e-14 83.2 54 68.5
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 2.0e-14 83.2 149 39.6
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.4e-14 81.3 54 66.7
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 3.7e-13 79.0 148 37.2
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 3.7e-13 79.0 183 35.5
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.1e-12 75.9 63 58.7
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 2.0e-11 73.2 52 65.4
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.3e-10 70.5 128 37.5
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.7e-08 62.8 36 75.0
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 8.8e-07 57.8 123 35.8
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 2.0e-06 56.6 35 71.4
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.0e-06 56.6 148 29.7
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 4.4e-06 55.5 159 29.6


User provided reference genes

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