Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 2.7e-94 348.6 170 100.0
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 8.8e-93 343.6 170 98.2
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 8.8e-93 343.6 170 98.2
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 8.0e-78 293.9 170 84.7
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 3.0e-77 292.0 170 84.7
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 6.7e-77 290.8 170 84.1
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 1.6e-57 226.5 167 70.7
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 2.9e-56 222.2 167 69.5
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 1.2e-44 183.7 164 62.8
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.9e-42 176.4 160 61.2
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 3.3e-39 165.6 186 52.7
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 4.3e-39 165.2 186 52.7
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 8.1e-38 161.0 182 52.7
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 1.8e-37 159.8 168 53.6
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 8.9e-37 157.5 173 52.0
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.7e-35 153.3 192 52.1
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.9e-35 152.5 138 59.4
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.4e-34 149.4 171 50.3
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 2.4e-34 149.4 156 55.8
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 3.2e-34 149.1 170 50.6
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 1.2e-33 147.1 164 51.8
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 3.0e-32 142.5 174 50.0
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 4.3e-31 138.7 176 47.2
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 1.2e-30 137.1 193 44.6
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 1.6e-30 136.7 163 49.7
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 3.6e-30 135.6 137 52.6
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 1.4e-29 133.7 193 43.0
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 2.3e-29 132.9 157 48.4
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 4.9e-27 125.2 139 51.1
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 7.8e-25 117.9 175 41.7
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 1.5e-23 113.6 131 52.7
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 1.5e-23 113.6 131 52.7
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 2.5e-23 112.8 180 41.1
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.4e-21 106.3 166 41.6
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 3.1e-21 105.9 172 42.4
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 8.9e-21 104.4 159 42.1
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 2.6e-20 102.8 154 44.2
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 9.9e-20 100.9 167 36.5
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 1.3e-19 100.5 155 38.7
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 2.2e-19 99.8 155 38.7
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 2.9e-19 99.4 155 38.1
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 2.9e-19 99.4 155 38.1
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 6.4e-19 98.2 155 38.1
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 8.4e-19 97.8 139 43.9
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 1.1e-18 97.4 146 41.1
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 1.9e-18 96.7 152 38.2
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 2.4e-18 96.3 161 34.8
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 7.1e-18 94.7 121 46.3
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.2e-17 94.0 200 34.5
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 7.8e-17 91.3 137 40.1
CARHR099620 Cardamine hirsuta HOM05D008029 ORTHO05D003588 7.8e-17 91.3 79 62.0
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 1.0e-16 90.9 166 34.9
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 1.7e-16 90.1 151 35.8
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 2.3e-16 89.7 151 35.1
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 3.0e-16 89.4 166 36.7
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 5.6e-15 85.1 160 34.4
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 7.3e-15 84.7 176 34.1
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 7.3e-15 84.7 125 41.6
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 7.3e-15 84.7 176 34.1
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 2.8e-14 82.8 143 39.9
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 3.6e-14 82.4 170 35.3
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 4.8e-14 82.0 149 36.9
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 4.8e-14 82.0 154 37.0
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 8.1e-14 81.3 137 38.7
TAR636G2528 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.4e-13 80.5 161 32.9
Ah.04g156870 Amaranthus hybridus HOM05D008029 ORTHO05D003588 2.4e-13 79.7 162 32.1
TAR636G1580 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.4e-13 79.7 152 34.2
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 4.0e-13 79.0 147 33.3
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.3e-13 78.6 168 33.9
BcaC02g12367 Brassica carinata HOM05D008029 ORTHO05D003588 6.9e-13 78.2 118 42.4
C04p04700 Brassica napus HOM05D008029 ORTHO05D003588 6.9e-13 78.2 118 42.4
ECA233G3755 Erigeron canadensis HOM05D000862 ORTHO05D003588 9.0e-13 77.8 157 36.9
Aqoxy1G02186 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 2.6e-12 76.3 136 36.8
AT1G05770 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 4.5e-12 75.5 158 32.3
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 4.5e-12 75.5 155 32.3
Potri.010G144900 Populus trichocarpa HOM05D008029 ORTHO05D003588 7.6e-12 74.7 150 32.7
AT2G43745 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 9.9e-12 74.3 63 63.5
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.3e-11 73.9 156 32.1
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.3e-11 73.9 156 32.1
DCAR_026995 Daucus carota HOM05D000862 ORTHO05D003588 1.3e-11 73.9 158 35.4
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.3e-11 73.9 155 32.3
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.3e-11 73.9 153 32.0
TAR636G1603 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.3e-11 73.9 165 32.1
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.3e-11 73.9 167 32.9
vmacro08050 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 1.3e-11 73.9 141 34.0
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 1.7e-11 73.6 151 36.4
Aa31LG1G25460 Aethionema arabicum HOM05D000402 ORTHO05D000263 2.2e-11 73.2 100 44.0
EL10Ac3g05501 Beta vulgaris HOM05D008029 ORTHO05D003588 2.9e-11 72.8 158 29.7
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 2.9e-11 72.8 175 30.3
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.9e-11 72.8 173 30.1
EL10Ac3g05502 Beta vulgaris HOM05D008029 ORTHO05D003588 3.8e-11 72.4 154 33.1
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 3.8e-11 72.4 159 37.1
C03p29120 Brassica napus HOM05D021446 ORTHO05D016094 4.9e-11 72.0 123 37.4
BolC3t15264H Brassica oleracea HOM05D021446 ORTHO05D016094 4.9e-11 72.0 123 37.4
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 6.4e-11 71.6 147 37.4
BcaC01g05217 Brassica carinata HOM05D021446 ORTHO05D016094 6.4e-11 71.6 105 39.0
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 6.4e-11 71.6 168 32.1
Aqoxy2G02742 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 8.4e-11 71.2 160 35.6
Sc13g0005910 Simmondsia chinensis HOM05D000862 ORTHO05D003588 8.4e-11 71.2 163 33.7
HanXRQChr12g0379721 Helianthus annuus HOM05D000862 ORTHO05D003588 1.1e-10 70.9 135 35.6
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.1e-10 70.9 182 31.3
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 4.2e-10 68.9 94 42.6
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 4.2e-10 68.9 150 31.3
CARHR099610 Cardamine hirsuta HOM05D008029 ORTHO05D003588 5.4e-10 68.6 54 61.1
CAN.G575.17 Capsicum annuum HOM05D000966 ORTHO05D002384 7.1e-10 68.2 129 34.1
DCAR_024495 Daucus carota HOM05D000075 ORTHO05D003588 7.1e-10 68.2 145 36.6
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 9.3e-10 67.8 167 31.1
DCAR_003013 Daucus carota HOM05D000862 ORTHO05D003588 1.2e-09 67.4 153 33.3
TAR636G0883 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.2e-09 67.4 136 33.8
Lsat_1_v5_gn_6_18420 Lactuca sativa HOM05D008029 ORTHO05D003588 1.6e-09 67.0 141 34.8
Nitab4.5_0001787g0050 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.6e-09 67.0 156 29.5
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.6e-09 67.0 153 31.4
Nitab4.5_0012347g0020 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.6e-09 67.0 156 29.5
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 3.5e-09 65.9 149 32.9
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 4.6e-09 65.5 157 33.1
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 4.6e-09 65.5 157 33.1
DCAR_026997 Daucus carota HOM05D000862 ORTHO05D003588 6.0e-09 65.1 143 32.9
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.0e-08 64.3 144 28.5
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 2.3e-08 63.2 125 37.6
TAR636G0218 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.3e-08 63.2 176 29.5
THA.LOC104815871 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 3.0e-08 62.8 164 31.1
Nitab4.5_0000941g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.9e-08 62.4 188 30.3
vmacro08049 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 8.7e-08 61.2 211 26.5
Os10g0132300 Oryza sativa ssp. japonica HOM05D000862 ORTHO05D049672 1.1e-07 60.8 128 34.4
Nn7g36896 Nelumbo nucifera HOM05D008029 ORTHO05D003588 1.5e-07 60.5 109 36.7
Dinv15175 Davidia involucrata HOM05D000862 ORTHO05D003588 4.3e-07 58.9 128 34.4
THA.LOC104800920 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 4.3e-07 58.9 160 28.1
Sopen09g031890 Solanum pennellii HOM05D000862 ORTHO05D003588 5.6e-07 58.5 153 30.7
PGSC0003DMG400041018 Solanum tuberosum HOM05D000862 ORTHO05D003588 5.6e-07 58.5 160 30.6
Sabra02G0024100 Salix brachista HOM05D000862 ORTHO05D000943 9.6e-07 57.8 141 31.9
CAN.G749.17 Capsicum annuum HOM05D000002 ORTHO05D003588 1.3e-06 57.4 152 31.6
Eucgr.I00640 Eucalyptus grandis HOM05D000862 ORTHO05D000943 1.6e-06 57.0 146 30.1
DCAR_024494 Daucus carota HOM05D008029 ORTHO05D003588 2.1e-06 56.6 148 28.4
Lj1A1150T112 Lonicera japonica HOM05D000862 ORTHO05D000943 3.7e-06 55.8 136 27.9


User provided reference genes

Program Settings