Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 9.2e-78 293.5 151 100.0
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.5e-75 285.4 151 98.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 9.6e-75 283.5 151 98.0
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-74 282.7 151 98.0
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.6e-74 282.7 151 98.0
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.4e-70 269.6 151 92.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-66 256.1 143 89.5
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.4e-64 248.4 143 85.3
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.9e-63 244.6 143 84.6
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.9e-63 244.6 142 86.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.4e-62 241.1 143 84.6
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.1e-61 239.2 143 83.2
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.4e-55 217.6 142 76.1
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 8.4e-47 190.7 151 61.6
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 5.5e-46 188.0 143 61.5
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.1e-46 187.6 151 60.9
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 7.1e-46 187.6 151 59.6
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.3e-46 187.2 151 60.9
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.2e-45 186.8 148 62.8
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.6e-45 186.4 148 60.8
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.6e-45 186.4 148 60.8
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.6e-45 186.4 148 60.8
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.6e-45 186.4 151 60.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 2.7e-45 185.7 151 61.6
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 4.6e-45 184.9 143 61.5
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.0e-45 184.5 151 58.9
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 6.0e-45 184.5 151 58.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 6.0e-45 184.5 142 62.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.8e-44 183.0 151 60.3
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.3e-44 182.6 142 62.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 3.0e-44 182.2 148 58.8
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 5.1e-44 181.4 143 60.8
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 5.1e-44 181.4 143 60.8
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 8.7e-44 180.6 151 58.3
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.5e-43 179.9 151 57.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-43 179.1 151 58.9
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.5e-43 179.1 150 57.3
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.5e-43 179.1 135 63.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 3.3e-43 178.7 151 58.3
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 3.3e-43 178.7 151 58.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 4.3e-43 178.3 151 57.6
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 7.4e-43 177.6 143 58.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 9.6e-43 177.2 143 59.4
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 9.6e-43 177.2 151 58.3
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-42 176.8 143 57.3
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-42 176.4 151 57.6
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 2.8e-42 175.6 151 56.3
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.8e-42 175.6 151 56.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.8e-42 175.6 151 57.0
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.7e-42 175.3 151 57.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 4.8e-42 174.9 143 58.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 6.3e-42 174.5 143 56.6
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.1e-41 173.7 142 59.2
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.1e-41 173.7 151 56.3
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-41 173.3 151 55.6
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.4e-41 173.3 140 57.9
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.8e-41 172.9 151 55.6
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 2.4e-41 172.6 141 57.4
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 3.1e-41 172.2 105 79.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.1e-41 172.2 150 54.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 5.3e-41 171.4 142 56.3
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 6.9e-41 171.0 151 53.6
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 6.9e-41 171.0 163 54.6
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 6.9e-41 171.0 143 55.9
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 6.9e-41 171.0 141 57.4
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 9.0e-41 170.6 143 54.5
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 9.0e-41 170.6 151 53.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 9.0e-41 170.6 151 53.0
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.2e-40 170.2 150 54.7
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 54.5
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.5e-40 169.9 151 54.3
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 2.0e-40 169.5 151 54.3
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 2.6e-40 169.1 143 53.8
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.6e-40 169.1 143 53.8
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.6e-40 169.1 143 53.8
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 3.4e-40 168.7 151 55.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 4.5e-40 168.3 143 55.9
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 4.5e-40 168.3 140 55.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 4.5e-40 168.3 142 57.7
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 4.5e-40 168.3 143 55.9
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 4.5e-40 168.3 151 54.3
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 5.9e-40 167.9 143 58.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 5.9e-40 167.9 143 55.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.9e-40 167.9 143 53.8
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.9e-40 167.9 143 53.8
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.6e-40 167.5 143 53.1
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.3e-39 166.8 143 55.2
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.3e-39 166.8 143 54.5
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.7e-39 166.4 158 53.2
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.7e-39 166.4 150 52.0
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 5.0e-39 164.9 142 54.9
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 8.5e-39 164.1 151 53.6
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 8.5e-39 164.1 142 52.1
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 8.5e-39 164.1 141 53.9
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.1e-38 163.7 161 51.6
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.1e-38 163.7 143 54.5
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.4e-38 163.3 143 56.6
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.4e-38 163.3 143 55.2
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.5e-38 162.5 147 53.1
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.5e-38 162.5 142 52.1
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 3.2e-38 162.2 151 53.6
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 7.2e-38 161.0 142 52.1
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 9.3e-38 160.6 162 51.2
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.2e-37 160.2 141 53.9
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 2.7e-37 159.1 150 51.3
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 3.6e-37 158.7 142 51.4
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 4.6e-37 158.3 140 56.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 4.6e-37 158.3 140 50.7
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 6.1e-37 157.9 182 46.2
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 6.1e-37 157.9 142 52.1
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 7.9e-37 157.5 151 53.0
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.0e-36 157.1 143 53.1
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.0e-36 157.1 143 52.4
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-36 156.8 142 49.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.3e-36 156.8 142 50.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.8e-36 156.4 141 51.1
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.8e-36 156.4 141 51.1
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.8e-36 156.4 141 53.2
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.3e-36 156.0 142 52.1
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 2.3e-36 156.0 135 54.8
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 3.0e-36 155.6 142 50.7
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 3.0e-36 155.6 142 50.0
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 3.9e-36 155.2 144 50.0
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 5.1e-36 154.8 141 50.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.1e-35 153.7 142 48.6
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.5e-35 153.3 154 49.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.3e-34 150.2 140 50.7
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 2.2e-34 149.4 140 50.7
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.7e-34 148.7 143 51.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.1e-33 147.1 141 51.8
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.8e-33 146.4 171 46.2
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 2.4e-33 146.0 149 51.0
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 4.1e-33 145.2 140 50.7
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 4.1e-33 145.2 186 44.6
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 6.9e-33 144.4 215 39.5
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.2e-31 139.4 107 59.8
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 3.8e-31 138.7 149 47.7
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.8e-28 129.8 108 54.6
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 5.1e-28 128.3 143 44.8
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 5.7e-27 124.8 108 52.8
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 5.7e-27 124.8 108 52.8
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-26 123.6 142 42.3
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-25 119.8 141 41.8
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.6e-24 115.9 152 46.1
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.0e-23 114.0 133 44.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.9e-23 112.5 127 45.7
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.9e-23 112.5 127 45.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 4.7e-21 105.1 144 38.2
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 6.1e-21 104.8 82 56.1
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.4e-20 103.6 90 56.7
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.0e-20 102.4 82 56.1
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 3.9e-20 102.1 82 56.1
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 5.7e-19 98.2 82 53.7
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 5.7e-19 98.2 86 52.3
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.3e-18 97.1 90 53.3
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 6.3e-18 94.7 130 33.1
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 6.3e-18 94.7 92 47.8
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 6.3e-18 94.7 150 34.0
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.2e-16 90.5 121 33.1
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 2.6e-16 89.4 137 33.6
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.5e-15 84.7 98 41.8
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 6.5e-15 84.7 142 33.1
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.5e-14 83.6 72 55.6
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.2e-14 82.4 132 31.1
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.2e-14 82.0 107 35.5
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 2.3e-12 76.3 102 42.2
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 3.1e-09 65.9 52 53.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-08 63.9 44 56.8
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 5.9e-08 61.6 150 27.3
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.9e-07 59.3 137 23.4
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.8e-07 58.9 81 42.0
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 8.5e-07 57.8 39 56.4


User provided reference genes

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