Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 9.4e-84 313.5 165 100.0
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 6.3e-80 300.8 165 95.8
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 6.3e-80 300.8 165 95.8
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 4.1e-79 298.1 165 94.5
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 4.1e-79 298.1 165 94.5
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 4.1e-79 298.1 165 94.5
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 1.2e-78 296.6 165 95.2
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 9.4e-76 287.0 155 96.8
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 4.0e-74 281.6 155 95.5
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 5.4e-71 271.2 171 86.5
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 3.5e-70 268.5 174 83.9
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 2.9e-69 265.4 170 85.3
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 3.8e-69 265.0 173 83.8
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 2.8e-67 258.8 170 82.9
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 1.0e-66 256.9 140 96.4
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 6.4e-64 247.7 171 79.5
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 1.1e-60 236.9 167 75.4
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 4.0e-58 228.4 174 71.8
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 3.6e-51 205.3 169 63.9
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 2.3e-50 202.6 169 63.3
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 6.8e-50 201.1 169 61.5
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 2.0e-49 199.5 166 62.0
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 2.0e-49 199.5 172 62.2
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 3.4e-49 198.7 171 62.6
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 4.4e-49 198.4 166 62.0
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 1.6e-46 189.9 181 55.2
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 2.1e-46 189.5 169 55.6
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 2.7e-46 189.1 174 60.3
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 1.0e-45 187.2 174 58.0
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 2.3e-45 186.0 171 56.1
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 3.9e-45 185.3 172 57.0
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 6.6e-45 184.5 171 55.6
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 6.6e-45 184.5 170 60.0
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 8.6e-45 184.1 173 53.8
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.1e-44 183.7 171 55.0
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 2.5e-44 182.6 172 54.1
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 2.5e-44 182.6 174 55.7
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 3.3e-44 182.2 171 56.7
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 4.3e-44 181.8 174 55.7
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 5.6e-44 181.4 169 56.2
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 1.2e-43 180.3 174 55.7
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 4.7e-43 178.3 165 56.4
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 6.2e-43 177.9 168 55.4
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 8.1e-43 177.6 165 55.8
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 8.1e-43 177.6 165 55.8
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.1e-42 177.2 174 55.7
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 3.1e-42 175.6 174 55.2
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 3.1e-42 175.6 174 55.2
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 8.9e-42 174.1 169 52.1
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 2.0e-41 172.9 168 53.0
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 2.6e-41 172.6 168 53.0
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 4.4e-41 171.8 168 53.6
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 5.8e-41 171.4 168 53.6
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 9.9e-41 170.6 163 54.6
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 9.9e-41 170.6 165 55.8
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 1.3e-40 170.2 154 58.4
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 1.3e-40 170.2 168 54.2
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 1.7e-40 169.9 169 51.5
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 1.7e-40 169.9 159 58.5
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 2.4e-39 166.0 175 54.3
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 5.4e-39 164.9 173 53.8
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 9.2e-39 164.1 167 50.9
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 1.2e-38 163.7 172 50.0
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 7.8e-38 161.0 169 50.3
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 1.7e-37 159.8 166 51.8
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 2.3e-37 159.5 164 51.2
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 3.0e-37 159.1 174 49.4
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 1.1e-36 157.1 167 50.9
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 3.3e-36 155.6 163 52.8
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 1.6e-35 153.3 167 50.3
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 3.6e-35 152.1 164 50.6
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 4.7e-35 151.8 156 51.9
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 2.4e-34 149.4 166 50.6
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 4.0e-34 148.7 163 47.2
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 4.0e-34 148.7 166 47.6
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 6.9e-34 147.9 168 48.8
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 8.9e-34 147.5 168 50.6
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 2.0e-33 146.4 161 48.4
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 8.4e-32 141.0 163 46.6
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 1.4e-31 140.2 163 47.2
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 3.2e-31 139.0 163 47.2
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 3.9e-29 132.1 166 44.0
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 3.3e-28 129.0 163 42.9
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 1.3e-27 127.1 167 46.7
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 6.2e-27 124.8 163 43.6
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 2.4e-26 122.9 141 46.8
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 5.3e-26 121.7 163 42.9
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 9.0e-26 120.9 165 44.2
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 1.2e-25 120.6 163 46.0
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.6e-25 119.4 150 45.3
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 2.2e-24 116.3 123 53.7
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 9.3e-23 110.9 126 48.4
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 2.1e-22 109.8 141 41.8
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 3.6e-19 99.0 166 36.7
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 2.4e-18 96.3 107 44.9
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 3.4e-17 92.4 148 38.5
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 8.4e-16 87.8 130 37.7
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 7.9e-14 81.3 133 34.6
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 2.5e-12 76.3 177 32.8
Pp3c3_12780 Physcomitrium patens HOM05D007459 ORTHO05D009234 5.3e-10 68.6 179 30.2
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 1.2e-09 67.4 179 29.6
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 3.4e-09 65.9 63 52.4
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 7.6e-09 64.7 84 39.3
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 4.2e-07 58.9 71 40.8


User provided reference genes

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