Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p70340 Brassica napus HOM05D007749 ORTHO05D009809 8.3e-67 256.9 130 100.0
BolC4t28537H Brassica oleracea HOM05D007749 ORTHO05D009809 8.3e-67 256.9 130 100.0
BcaC02g07190 Brassica carinata HOM05D007749 ORTHO05D009809 1.8e-66 255.8 130 99.2
BraA04t18728Z Brassica rapa HOM05D007749 ORTHO05D009809 1.8e-66 255.8 130 99.2
BcaB06g29301 Brassica carinata HOM05D007749 ORTHO05D009809 3.1e-66 255.0 130 99.2
A04p32650 Brassica napus HOM05D007749 ORTHO05D009809 7.0e-66 253.8 130 98.5
CARHR138400 Cardamine hirsuta HOM05D007749 ORTHO05D009809 1.0e-61 240.0 134 89.6
Sp4g25410 Schrenkiella parvula HOM05D007749 ORTHO05D009809 4.0e-61 238.0 127 93.7
AT2G43310 Arabidopsis thaliana HOM05D007749 ORTHO05D009809 1.2e-60 236.5 125 92.8
Thhalv10001764m.g Eutrema salsugineum HOM05D007749 ORTHO05D009809 2.0e-60 235.7 127 91.3
AL4G41990 Arabidopsis lyrata HOM05D007749 ORTHO05D009809 8.3e-59 230.3 134 85.8
Aa31LG1G25110 Aethionema arabicum HOM05D007749 ORTHO05D009809 1.0e-56 223.4 127 86.6
Carub.0004s2577 Capsella rubella HOM05D007749 ORTHO05D009809 2.9e-56 221.9 124 87.9
THA.LOC104803661 Tarenaya hassleriana HOM05D007749 ORTHO05D009809 2.4e-50 202.2 125 76.8
BcaB06g29300 Brassica carinata HOM05D007749 ORTHO05D009809 3.5e-49 198.4 100 100.0
Sed0008576 Sechium edule HOM05D007749 ORTHO05D009809 2.9e-43 178.7 119 74.8
Manes.11G120200 Manihot esculenta HOM05D007749 ORTHO05D009809 1.4e-42 176.4 127 66.1
ClCG08G004660 Citrullus lanatus HOM05D007749 ORTHO05D009809 5.4e-42 174.5 118 72.9
CsaV3_6G003910 Cucumis sativus L. HOM05D007749 ORTHO05D009809 5.4e-42 174.5 118 72.9
MELO3C011656.2 Cucumis melo HOM05D007749 ORTHO05D009809 3.5e-41 171.8 118 72.9
COL.COLO4_07660 Corchorus olitorius HOM05D007749 ORTHO05D009809 4.6e-41 171.4 123 66.7
MD04G1040200 Malus domestica HOM05D007749 ORTHO05D009809 4.6e-41 171.4 116 71.6
GSVIVG01010752001 Vitis vinifera HOM05D007749 ORTHO05D009809 3.9e-40 168.3 114 71.9
CANSAT56G0324 Cannabis sativa HOM05D007749 ORTHO05D009809 1.1e-39 166.8 122 65.6
CANSAT56G2176 Cannabis sativa HOM05D007749 ORTHO05D009809 1.1e-39 166.8 122 65.6
Gohir.D10G129800 Gossypium hirsutum HOM05D007749 ORTHO05D009809 1.9e-39 166.0 125 61.6
TAR633G0982 Trochodendron aralioides HOM05D007749 ORTHO05D009809 1.9e-39 166.0 119 67.2
Gohir.A10G136900 Gossypium hirsutum HOM05D007749 ORTHO05D009809 2.5e-39 165.6 125 61.6
Gorai.011G143100 Gossypium raimondii HOM05D007749 ORTHO05D009809 3.3e-39 165.2 125 61.6
Thecc.04G180100 Theobroma cacao HOM05D007749 ORTHO05D009809 4.3e-39 164.9 127 60.6
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 9.5e-39 163.7 122 64.8
Duzib151G1147 Durio zibethinus HOM05D007749 ORTHO05D009809 9.5e-39 163.7 127 61.4
Lj3g0008958 Lotus japonicus HOM05D007749 ORTHO05D009809 1.2e-38 163.3 120 66.7
Oeu037445.1 Olea europaea HOM05D007749 ORTHO05D009809 2.8e-38 162.2 119 64.7
AUR62005121 Chenopodium quinoa HOM05D007749 ORTHO05D009809 3.6e-38 161.8 115 66.1
TWI15G0305 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 3.6e-38 161.8 127 60.6
TWI15G0741 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 3.6e-38 161.8 127 60.6
AUR62000855 Chenopodium quinoa HOM05D007749 ORTHO05D009809 6.2e-38 161.0 115 66.1
PGR142G0736 Punica granatum HOM05D007749 ORTHO05D009809 1.1e-37 160.2 124 65.3
CDE04G2919 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 6.8e-37 157.5 116 64.7
QL10p048728 Quercus lobata HOM05D007749 ORTHO05D009809 6.8e-37 157.5 119 66.4
CDE07G1555 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 1.5e-36 156.4 116 64.7
Psat1g007040 Pisum sativum HOM05D007749 ORTHO05D009809 2.0e-36 156.0 118 65.3
Glyma.13G344000 Glycine max HOM05D007749 ORTHO05D009809 5.8e-36 154.5 116 66.4
Sabra07G0104500 Salix brachista HOM05D007749 ORTHO05D009809 7.5e-36 154.1 123 64.2
Eucgr.H00373 Eucalyptus grandis HOM05D007749 ORTHO05D009809 1.3e-35 153.3 120 64.2
Lalb_Chr14g0372461 Lupinus albus HOM05D007749 ORTHO05D009809 1.3e-35 153.3 118 66.1
Atru.chr3.1496 Acer truncatum HOM05D007749 ORTHO05D009809 1.7e-35 152.9 125 60.8
Lsat_1_v5_gn_5_23460 Lactuca sativa HOM05D007749 ORTHO05D009809 6.4e-35 151.0 122 58.2
Medtr2g098870 Medicago truncatula HOM05D007749 ORTHO05D009809 6.4e-35 151.0 119 62.2
Rhsim09G0028100 Rhododendron simsii HOM05D007749 ORTHO05D009809 6.4e-35 151.0 115 65.2
Phvul.005G152700 Phaseolus vulgaris HOM05D007749 ORTHO05D009809 1.1e-34 150.2 121 66.1
PGSC0003DMG400020513 Solanum tuberosum HOM05D007749 ORTHO05D009809 1.4e-34 149.8 115 65.2
Migut.B01511 Erythranthe guttata HOM05D007749 ORTHO05D009809 2.4e-34 149.1 116 64.7
Potri.017G030200 Populus trichocarpa HOM05D007749 ORTHO05D009809 2.4e-34 149.1 123 65.9
VMungo1080G1081 Vigna mungo HOM05D007749 ORTHO05D009809 5.4e-34 147.9 121 64.5
CiPaw.02G055000 Carya illinoinensis HOM05D007749 ORTHO05D009809 2.7e-33 145.6 120 60.8
Potri.007G128100 Populus trichocarpa HOM05D007749 ORTHO05D009809 3.5e-33 145.2 125 64.8
Nitab4.5_0005487g0020 Nicotiana tabacum HOM05D002689 ORTHO05D003129 4.6e-33 144.8 115 65.2
ECA246G4014 Erigeron canadensis HOM05D007749 ORTHO05D009809 6.0e-33 144.4 119 59.7
Sopen08g003040 Solanum pennellii HOM05D007749 ORTHO05D009809 7.8e-33 144.1 115 61.7
CAN.G845.29 Capsicum annuum HOM05D007749 ORTHO05D009809 1.0e-32 143.7 120 64.2
SGA_v2.0_scaffold52G19242 Striga asiatica HOM05D007749 ORTHO05D009809 5.1e-32 141.4 118 58.5
Cc00_g14450 Coffea canephora HOM05D007749 ORTHO05D009809 8.6e-32 140.6 124 58.1
FvH4_4g10741 Fragaria vesca HOM05D007749 ORTHO05D009809 1.1e-31 140.2 116 62.9
MD07G1093600 Malus domestica HOM05D007749 ORTHO05D009809 1.9e-31 139.4 100 69.0
HanXRQChr02g0051151 Helianthus annuus HOM05D007749 ORTHO05D009809 5.6e-31 137.9 126 53.2
SalBow7G2644 Salvia bowleyana HOM05D007749 ORTHO05D009809 5.6e-31 137.9 115 58.3
Prupe.1G192700 Prunus persica HOM05D007749 ORTHO05D009809 1.2e-30 136.7 104 68.3
unitig_61.g26426 Utricularia gibba HOM05D007749 ORTHO05D009809 1.2e-30 136.7 115 56.5
Aqoxy7G01786 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 1.1e-29 133.7 116 56.9
MD07G1010900 Malus domestica HOM05D007749 ORTHO05D009809 1.4e-29 133.3 107 63.6
Aqoxy7G01782 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 1.8e-29 132.9 116 56.9
Sc25g0002390 Simmondsia chinensis HOM05D007749 ORTHO05D009809 1.8e-29 132.9 93 69.9
DCAR_008501 Daucus carota HOM05D007749 ORTHO05D009809 4.0e-29 131.7 120 51.7
Ciclev10022681m.g Citrus clementina HOM05D007749 ORTHO05D009809 6.8e-29 131.0 118 56.8
HPP92_012796 Vanilla planifolia HOM05D007749 ORTHO05D009809 3.7e-27 125.2 120 55.0
Glyma.15G030300 Glycine max HOM05D007749 ORTHO05D009809 1.1e-26 123.6 105 61.0
ATR0824G043 Amborella trichopoda HOM05D007749 ORTHO05D009809 9.2e-26 120.6 110 50.9
Ca_01260_v3 Cicer arietinum L. HOM05D007749 ORTHO05D009809 1.6e-25 119.8 92 62.0
Prupe.1G193800 Prunus persica HOM05D007749 ORTHO05D009809 2.3e-24 115.9 89 62.9
Sc04g0006060 Simmondsia chinensis HOM05D007749 ORTHO05D009809 3.0e-24 115.5 95 62.1
PGSC0003DMG400020496 Solanum tuberosum HOM05D007749 ORTHO05D009809 3.0e-24 115.5 89 64.0
QL02p093050 Quercus lobata HOM05D000759 ORTHO05D000574 7.3e-23 110.9 100 57.0
Actinidia35976 Actinidia chinensis HOM05D007749 ORTHO05D009809 2.4e-21 105.9 122 49.2
Actinidia34603 Actinidia chinensis HOM05D007749 ORTHO05D009809 8.9e-21 104.0 122 48.4
Nitab4.5_0010461g0010 Nicotiana tabacum HOM05D002689 ORTHO05D003129 1.7e-19 99.8 77 64.9
QL04p015298 Quercus lobata HOM05D007749 ORTHO05D009809 1.9e-18 96.3 89 55.1
HPP92_012728 Vanilla planifolia HOM05D007749 ORTHO05D009809 8.7e-16 87.4 122 45.9
SEGI_37948 Sequoiadendron giganteum HOM05D007749 ORTHO05D009809 8.1e-14 80.9 113 36.3
MD08G1180100 Malus domestica HOM05D007749 ORTHO05D009809 1.4e-10 70.1 56 66.1
vmacro02359 Vaccinium macrocarpon HOM05D007749 ORTHO05D009809 2.3e-08 62.8 52 55.8
SEGI_10158 Sequoiadendron giganteum HOM05D007749 ORTHO05D009809 4.8e-06 55.1 83 33.7


User provided reference genes

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