Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 6.7e-67 257.3 137 100.0
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 3.7e-65 251.5 137 98.5
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 3.7e-65 251.5 137 98.5
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 5.5e-45 184.5 227 53.7
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 4.6e-44 181.4 221 54.8
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 6.7e-43 177.6 228 53.9
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 6.7e-43 177.6 228 53.9
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-42 176.4 228 53.5
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.5e-42 176.4 228 53.5
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 4.3e-42 174.9 228 53.1
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 3.4e-39 165.2 224 48.7
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 5.9e-39 164.5 227 48.5
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.3e-38 163.3 224 48.2
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.6e-36 156.4 221 47.1
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 2.3e-35 152.5 227 45.4
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 4.1e-32 141.7 74 98.6
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 3.6e-28 128.6 225 42.7
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 9.7e-26 120.6 64 100.0
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-25 119.0 64 98.4
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 4.8e-25 118.2 64 98.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.4e-24 116.7 213 41.8
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 5.3e-24 114.8 189 45.5
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 5.0e-22 108.2 109 62.4
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 7.2e-21 104.4 57 98.2
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 2.1e-20 102.8 222 37.4
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.7e-20 102.4 221 37.6
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 4.7e-20 101.7 220 35.5
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 6.1e-20 101.3 215 37.7
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.0e-19 100.5 220 35.5
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 4.0e-19 98.6 217 35.0
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 5.2e-19 98.2 227 36.6
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.8e-19 97.8 226 35.0
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 6.8e-19 97.8 226 35.0
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 1.2e-18 97.1 161 42.9
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.5e-18 96.7 223 35.0
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.5e-18 96.7 223 35.0
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 2.0e-18 96.3 218 35.8
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 2.0e-18 96.3 218 35.8
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.6e-18 95.9 226 34.1
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.4e-18 95.5 221 36.2
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 3.4e-18 95.5 217 36.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.4e-18 95.1 219 36.1
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 5.7e-18 94.7 220 35.0
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 5.7e-18 94.7 218 35.8
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 7.5e-18 94.4 225 36.4
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.7e-18 94.0 226 34.5
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 9.7e-18 94.0 217 34.6
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 9.7e-18 94.0 223 37.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.3e-17 93.6 226 34.5
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.7e-17 93.2 223 34.5
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.2e-17 92.8 226 34.1
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 2.2e-17 92.8 218 35.3
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.2e-17 92.8 226 34.5
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 8.3e-17 90.9 218 34.4
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.1e-16 90.5 222 33.8
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.4e-16 90.1 221 35.7
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.8e-16 89.7 223 33.6
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.8e-16 89.7 222 33.8
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.4e-16 89.4 225 35.6
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 4.1e-16 88.6 219 32.9
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.1e-16 88.6 224 33.9
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 7.0e-16 87.8 219 33.8
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 7.0e-16 87.8 222 33.3
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 9.1e-16 87.4 219 35.2
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.0e-15 86.3 218 33.9
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.0e-15 86.3 218 33.9
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 3.5e-15 85.5 210 33.8
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 5.9e-15 84.7 206 34.0
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 7.7e-15 84.3 213 32.9
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.0e-14 84.0 210 33.3
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.0e-14 84.0 211 32.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.3e-14 83.6 216 31.5
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.7e-14 83.2 220 32.7
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 2.2e-14 82.8 218 32.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 2.9e-14 82.4 218 33.9
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.9e-14 82.4 219 34.7
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 6.5e-14 81.3 220 33.2
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 8.5e-14 80.9 216 33.3
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.1e-13 80.5 206 32.0
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 1.1e-13 80.5 220 31.4
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.1e-13 80.5 220 32.7
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 2.5e-13 79.3 62 66.1
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 2.5e-13 79.3 62 66.1
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-13 79.3 232 31.5
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-13 79.3 232 31.5
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.5e-13 79.3 64 65.6
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 3.2e-13 79.0 208 34.1
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 3.2e-13 79.0 241 31.1
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.2e-13 79.0 241 31.1
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 3.2e-13 79.0 64 65.6
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.2e-13 78.6 232 31.5
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 7.2e-13 77.8 204 31.9
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 9.4e-13 77.4 196 32.1
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 9.4e-13 77.4 62 64.5
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 9.4e-13 77.4 62 64.5
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 9.4e-13 77.4 217 30.9
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-12 77.0 232 31.0
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-12 76.6 232 31.0
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.6e-12 76.6 209 32.1
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.7e-12 75.9 187 33.2
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 2.7e-12 75.9 64 64.1
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.7e-12 75.9 59 62.7
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 3.6e-12 75.5 219 31.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 3.6e-12 75.5 64 64.1
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 6.1e-12 74.7 190 33.7
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 6.1e-12 74.7 59 64.4
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 6.1e-12 74.7 232 30.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 8.0e-12 74.3 61 63.9
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.0e-11 73.9 212 31.6
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-11 73.6 158 38.0
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.8e-11 73.2 232 30.6
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.0e-11 72.0 215 32.1
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.0e-11 72.0 215 32.1
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 5.2e-11 71.6 196 31.1
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 5.2e-11 71.6 61 62.3
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 6.8e-11 71.2 59 61.0
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 6.8e-11 71.2 64 59.4
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 6.8e-11 71.2 61 60.7
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-10 70.1 62 61.3
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 2.0e-10 69.7 60 61.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.0e-10 69.7 60 61.7
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.0e-10 69.7 218 29.8
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 2.6e-10 69.3 62 56.5
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 9.8e-10 67.4 59 59.3
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 9.8e-10 67.4 58 60.3
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 9.8e-10 67.4 217 29.5
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 2.2e-09 66.2 59 59.3
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-08 63.9 171 36.3
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.4e-08 62.8 214 29.0
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.0e-07 59.7 186 30.1
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 2.0e-07 59.7 53 56.6
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 3.5e-07 58.9 59 50.8
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 3.5e-07 58.9 206 28.2
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 4.5e-07 58.5 53 56.6
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.0e-06 57.4 62 41.9
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.3e-06 57.0 39 74.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.3e-06 56.2 62 41.9
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 3.8e-06 55.5 35 74.3
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 3.8e-06 55.5 131 37.4
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 5.0e-06 55.1 230 27.0


User provided reference genes

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