Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 1.0e-125 453.8 288 100.0
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 5.8e-121 438.0 288 97.6
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 5.8e-121 438.0 288 97.6
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 5.8e-121 438.0 288 97.6
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 5.8e-121 438.0 288 97.6
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 1.2e-115 420.2 298 88.6
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 4.2e-95 352.1 358 71.2
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 2.7e-94 349.4 311 74.0
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 4.6e-94 348.6 324 74.4
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 7.1e-87 324.7 333 67.9
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 6.7e-85 318.2 302 71.5
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 2.1e-83 313.2 325 70.5
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 6.5e-80 301.6 398 58.8
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 1.1e-79 300.8 407 55.0
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 1.4e-79 300.4 401 58.4
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 1.9e-79 300.1 415 54.5
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 2.1e-78 296.6 415 54.0
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 3.9e-69 265.8 314 64.3
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 2.6e-57 226.5 346 45.4
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 1.7e-51 207.2 287 56.1
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 6.3e-51 205.3 342 50.0
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 8.2e-51 204.9 288 58.3
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 2.4e-50 203.4 285 57.2
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 7.0e-50 201.8 291 51.9
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 5.0e-48 195.7 285 55.1
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 1.6e-46 190.7 292 51.0
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 2.1e-46 190.3 313 54.6
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 3.6e-46 189.5 126 69.8
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 4.7e-46 189.1 288 47.6
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.0e-45 186.4 288 49.0
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 3.4e-44 183.0 297 45.1
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 5.7e-44 182.2 337 47.2
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 9.8e-44 181.4 128 68.8
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 1.7e-43 180.6 284 51.8
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 1.7e-43 180.6 169 63.3
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.2e-43 180.3 289 48.8
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 2.8e-43 179.9 128 68.0
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 2.8e-43 179.9 128 68.0
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 3.1e-42 176.4 297 54.5
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 3.1e-42 176.4 170 61.2
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 4.1e-42 176.0 126 65.9
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 4.1e-42 176.0 126 65.1
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 7.0e-42 175.3 126 66.7
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 7.0e-42 175.3 281 53.7
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 9.1e-42 174.9 132 62.9
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 9.1e-42 174.9 287 56.8
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 2.0e-41 173.7 301 51.5
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.7e-41 173.3 128 64.8
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 2.7e-41 173.3 301 50.8
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 3.5e-41 172.9 125 65.6
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 4.5e-41 172.6 123 65.0
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 4.5e-41 172.6 311 47.6
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 5.9e-41 172.2 168 60.7
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.3e-40 171.0 337 47.8
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 1.7e-40 170.6 124 66.1
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 2.2e-40 170.2 128 63.3
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 2.2e-40 170.2 345 48.4
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 2.2e-40 170.2 315 43.2
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 2.2e-40 170.2 126 63.5
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 2.9e-40 169.9 128 63.3
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 2.9e-40 169.9 295 52.2
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 2.9e-40 169.9 305 45.2
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 3.8e-40 169.5 315 42.9
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 5.0e-40 169.1 318 45.0
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 5.0e-40 169.1 126 63.5
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 6.5e-40 168.7 284 52.5
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 1.1e-39 167.9 309 43.7
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 1.9e-39 167.2 124 64.5
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 1.9e-39 167.2 304 44.1
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 2.5e-39 166.8 116 70.7
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 2.5e-39 166.8 319 47.6
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 4.2e-39 166.0 299 48.2
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 7.2e-39 165.2 288 45.8
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 7.2e-39 165.2 305 52.5
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 7.2e-39 165.2 118 67.8
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 9.5e-39 164.9 303 51.2
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 1.6e-38 164.1 304 51.3
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 1.6e-38 164.1 122 67.2
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.1e-38 163.7 120 67.5
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.8e-38 163.3 287 47.0
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 3.6e-38 162.9 117 67.5
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 3.6e-38 162.9 119 63.0
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 4.7e-38 162.5 356 43.3
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 6.1e-38 162.2 281 51.6
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 8.0e-38 161.8 322 46.6
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 8.0e-38 161.8 293 50.5
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 1.0e-37 161.4 121 65.3
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.0e-37 161.4 297 43.4
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 1.0e-37 161.4 126 61.9
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 1.0e-37 161.4 122 64.8
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 1.4e-37 161.0 116 67.2
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 1.4e-37 161.0 160 56.2
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 1.8e-37 160.6 339 42.2
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 4.0e-37 159.5 113 69.0
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.0e-37 159.5 120 65.0
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 4.0e-37 159.5 126 61.9
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 5.2e-37 159.1 305 56.1
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 5.2e-37 159.1 292 52.4
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 6.8e-37 158.7 117 63.2
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.2e-36 157.9 284 49.3
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 1.5e-36 157.5 128 57.8
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 2.0e-36 157.1 283 48.8
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 5.7e-36 155.6 295 46.4
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.7e-36 155.6 186 51.1
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 7.5e-36 155.2 119 61.3
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 9.8e-36 154.8 176 53.4
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 9.8e-36 154.8 116 66.4
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 9.8e-36 154.8 121 63.6
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.7e-35 154.1 131 60.3
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 2.8e-35 153.3 163 56.4
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.8e-35 153.3 116 67.2
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 6.3e-35 152.1 128 60.9
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 6.3e-35 152.1 117 67.5
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 8.3e-35 151.8 121 63.6
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 8.3e-35 151.8 113 63.7
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 1.4e-34 151.0 142 55.6
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 1.4e-34 151.0 113 61.1
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 1.8e-34 150.6 293 43.0
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 1.8e-34 150.6 120 65.0
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 1.8e-34 150.6 131 58.8
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 1.8e-34 150.6 111 63.1
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 2.4e-34 150.2 298 54.4
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 3.1e-34 149.8 131 58.8
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 7.0e-34 148.7 159 57.9
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 2.0e-33 147.1 115 60.9
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 2.0e-33 147.1 161 50.9
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 2.7e-33 146.7 126 61.1
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 7.8e-33 145.2 111 63.1
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 1.3e-32 144.4 171 55.6
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 2.3e-32 143.7 125 60.8
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 3.8e-32 142.9 127 60.6
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 3.8e-32 142.9 300 40.3
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 8.6e-32 141.7 121 61.2
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 1.1e-31 141.4 113 62.8
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 1.9e-31 140.6 118 59.3
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 1.9e-31 140.6 122 58.2
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 3.3e-31 139.8 120 55.8
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 7.3e-31 138.7 120 59.2
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 9.5e-31 138.3 122 57.4
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 2.8e-30 136.7 118 55.1
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 8.0e-30 135.2 124 57.3
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 8.0e-30 135.2 123 56.1
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 5.2e-29 132.5 126 55.6
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 5.2e-29 132.5 158 44.9
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 6.8e-29 132.1 124 55.6
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 2.0e-28 130.6 125 51.2
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 7.5e-28 128.6 113 54.9
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 7.5e-28 128.6 98 65.3
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 7.5e-28 128.6 114 58.8
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 1.7e-27 127.5 115 58.3
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 2.2e-27 127.1 115 58.3
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 2.2e-27 127.1 115 58.3
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 2.2e-27 127.1 115 58.3
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 4.1e-26 122.9 130 51.5
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 9.2e-26 121.7 111 53.2
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 9.2e-26 121.7 118 55.1
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 1.2e-25 121.3 112 51.8
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 2.7e-25 120.2 113 51.3
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 3.5e-25 119.8 122 50.0
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 3.5e-25 119.8 124 52.4
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 6.6e-24 115.5 125 49.6
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 8.6e-24 115.2 160 50.0
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.5e-23 114.4 116 49.1
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 1.9e-23 114.0 121 48.8
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 3.6e-22 109.8 113 49.6
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 6.2e-22 109.0 107 55.1
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 6.8e-21 105.5 94 51.1
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 2.0e-20 104.0 110 49.1
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 3.9e-16 89.7 138 40.6
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 3.9e-16 89.7 117 44.4
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 8.6e-16 88.6 135 43.0
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 1.9e-15 87.4 113 43.4
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 3.6e-14 83.2 123 39.8
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 6.8e-13 79.0 120 42.5
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 3.4e-12 76.6 67 58.2
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 1.9e-10 70.9 48 56.2
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 4.1e-10 69.7 117 36.8
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 7.1e-10 68.9 121 37.2
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 3.5e-09 66.6 112 35.7
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.2e-06 58.2 114 32.5


User provided reference genes

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