Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 5.1e-105 384.4 193 100.0
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 6.4e-92 340.9 202 88.1
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.1e-91 340.1 202 88.1
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.3e-63 246.9 122 99.2
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 7.2e-59 231.1 113 100.0
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 5.3e-54 214.9 115 92.2
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.2e-53 213.8 115 91.3
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 3.5e-53 212.2 117 90.6
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 3.5e-53 212.2 117 90.6
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.3e-52 210.3 115 89.6
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 1.7e-52 209.9 112 92.0
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.7e-52 209.9 112 92.0
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.7e-52 209.9 112 92.0
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.2e-52 209.5 115 89.6
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.2e-52 209.5 115 89.6
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 2.2e-52 209.5 113 91.2
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.2e-52 209.5 115 89.6
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.1e-51 207.2 115 87.8
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 4.2e-51 205.3 115 87.8
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 2.1e-50 203.0 148 73.6
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.6e-50 202.2 115 87.0
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 4.7e-50 201.8 112 90.2
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 4.7e-50 201.8 115 87.0
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 6.1e-50 201.4 118 85.6
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 8.0e-50 201.1 113 86.7
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.0e-49 200.7 112 89.3
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.4e-49 200.3 105 92.4
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.8e-49 199.9 115 86.1
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.0e-49 198.7 115 82.6
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.0e-49 198.7 116 84.5
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.1e-46 189.1 115 81.7
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 2.7e-45 186.0 113 77.0
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.0e-41 174.1 114 72.8
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.8e-41 173.3 110 74.5
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 2.3e-41 172.9 124 69.4
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.2e-40 170.6 109 74.3
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.2e-40 170.6 110 73.6
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.2e-40 170.6 108 74.1
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.0e-40 169.9 111 73.0
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.6e-40 169.5 121 71.1
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.6e-40 169.5 121 71.1
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 7.5e-40 167.9 117 70.9
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 9.8e-40 167.5 116 69.8
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 9.8e-40 167.5 115 68.7
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 9.8e-40 167.5 100 79.0
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.3e-39 167.2 116 69.8
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.8e-39 166.0 92 78.3
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 3.7e-39 165.6 117 70.1
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 3.7e-39 165.6 104 74.0
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 4.9e-39 165.2 111 70.3
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 6.3e-39 164.9 115 67.0
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 6.3e-39 164.9 107 72.9
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 8.3e-39 164.5 95 75.8
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 8.3e-39 164.5 105 73.3
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.1e-38 164.1 97 77.3
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 1.1e-38 164.1 107 72.0
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.1e-38 164.1 100 78.0
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.1e-38 164.1 116 69.0
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.4e-38 163.7 117 67.5
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.4e-38 162.9 107 71.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 3.1e-38 162.5 107 71.0
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.1e-38 162.5 100 77.0
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.1e-38 162.5 97 76.3
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 4.1e-38 162.2 116 65.5
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 4.1e-38 162.2 96 79.2
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.1e-38 162.2 100 77.0
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 4.1e-38 162.2 116 65.5
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 5.4e-38 161.8 110 67.3
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 5.4e-38 161.8 110 67.3
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 5.4e-38 161.8 100 77.0
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 5.4e-38 161.8 122 66.4
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 9.1e-38 161.0 96 79.2
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 9.1e-38 161.0 109 70.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.2e-37 160.6 110 68.2
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.6e-37 160.2 117 68.4
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.6e-37 160.2 114 64.9
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 2.7e-37 159.5 111 67.6
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 2.7e-37 159.5 109 69.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 2.7e-37 159.5 94 76.6
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.7e-37 159.5 97 76.3
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 3.5e-37 159.1 100 74.0
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 3.5e-37 159.1 115 65.2
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 5.9e-37 158.3 107 70.1
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 5.9e-37 158.3 99 73.7
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 7.7e-37 157.9 118 63.6
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.0e-36 157.5 100 75.0
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.0e-36 157.5 109 71.6
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.0e-36 157.5 112 67.0
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.7e-36 156.8 110 65.5
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.7e-36 156.8 96 75.0
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.3e-36 156.4 96 76.0
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 2.9e-36 156.0 109 67.0
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 2.9e-36 156.0 108 69.4
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 2.9e-36 156.0 110 67.3
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 2.9e-36 156.0 95 76.8
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 2.9e-36 156.0 97 73.2
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.8e-36 155.6 97 75.3
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 5.0e-36 155.2 116 63.8
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 6.6e-36 154.8 98 75.5
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 6.6e-36 154.8 105 68.6
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 8.6e-36 154.5 95 75.8
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.1e-35 154.1 114 64.9
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.1e-35 154.1 102 70.6
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.9e-35 153.3 114 63.2
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.9e-35 153.3 103 72.8
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.9e-35 153.3 108 65.7
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.9e-35 153.3 108 65.7
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 2.5e-35 152.9 107 65.4
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.5e-35 152.9 111 64.0
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 2.5e-35 152.9 113 63.7
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 5.5e-35 151.8 93 76.3
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 5.5e-35 151.8 94 74.5
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 7.2e-35 151.4 112 65.2
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 7.2e-35 151.4 86 74.4
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 9.5e-35 151.0 113 63.7
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.2e-34 150.6 114 60.5
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.6e-34 150.2 95 73.7
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.1e-34 149.8 105 67.6
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 2.1e-34 149.8 96 74.0
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 4.7e-34 148.7 106 65.1
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 4.7e-34 148.7 108 65.7
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.0e-33 147.5 114 60.5
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.4e-33 147.1 97 70.1
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.4e-33 147.1 105 64.8
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.4e-33 147.1 105 64.8
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 4.0e-33 145.6 107 61.7
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 5.2e-33 145.2 107 64.5
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 5.2e-33 145.2 82 76.8
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.8e-33 144.8 105 63.8
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 4.4e-32 142.1 96 67.7
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.4e-32 142.1 100 67.0
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.5e-32 141.4 105 63.8
BcaC02g07251 Brassica carinata HOM05D004651 ORTHO05D039129 1.3e-31 140.6 72 98.6
BolC4t28460H Brassica oleracea HOM05D004651 ORTHO05D039129 1.3e-31 140.6 72 98.6
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 2.8e-31 139.4 77 76.6
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 2.8e-31 139.4 108 63.9
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 3.7e-31 139.0 94 69.1
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 2.0e-29 133.3 117 57.3
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 5.9e-29 131.7 78 70.5
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 5.9e-29 131.7 114 55.3
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.9e-28 129.4 118 55.9
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.5e-27 126.3 78 67.9
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 3.3e-27 125.9 65 92.3
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.8e-26 122.9 82 72.0
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 3.4e-24 115.9 89 58.4
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 2.7e-21 106.3 70 74.3
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 4.6e-21 105.5 70 67.1
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 1.1e-19 100.9 104 47.1
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 7.3e-19 98.2 89 51.7
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 2.1e-18 96.7 70 74.3
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.4e-17 94.0 76 61.8
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 4.0e-17 92.4 51 82.4
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.4e-16 89.4 113 52.2
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 4.4e-16 89.0 107 45.8
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.9e-14 83.6 73 50.7
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 8.6e-12 74.7 66 53.0
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 5.6e-11 72.0 71 50.7
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 7.6e-08 61.6 56 57.1
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 9.9e-08 61.2 61 54.1


User provided reference genes

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