Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 1.3e-22 109.0 62 100.0
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 1.3e-22 109.0 62 100.0
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 1.3e-22 109.0 62 100.0
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 1.3e-22 109.0 62 100.0
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 1.3e-22 109.0 62 100.0
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 3.9e-22 107.5 62 98.4
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 5.0e-22 107.1 62 96.8
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 5.0e-22 107.1 62 96.8
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 1.9e-21 105.1 62 96.8
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 1.9e-21 105.1 62 96.8
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 4.3e-21 104.0 62 95.2
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 4.3e-21 104.0 62 95.2
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 4.3e-21 104.0 62 95.2
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 4.3e-21 104.0 62 95.2
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.2e-20 102.4 62 91.9
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 1.2e-20 102.4 62 91.9
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 2.8e-20 101.3 62 93.5
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 1.0e-19 99.4 62 88.7
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.5e-18 95.5 63 90.5
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 3.7e-17 90.9 63 87.3
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 4.9e-17 90.5 63 88.9
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 6.4e-17 90.1 62 83.9
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 8.3e-17 89.7 63 87.3
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 8.3e-17 89.7 63 87.3
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 1.9e-16 88.6 63 87.3
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 2.4e-16 88.2 63 87.3
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 2.4e-16 88.2 63 87.3
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 4.1e-16 87.4 63 85.7
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 4.1e-16 87.4 63 85.7
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 4.1e-16 87.4 63 85.7
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 4.1e-16 87.4 63 87.3
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 4.1e-16 87.4 63 85.7
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 4.1e-16 87.4 63 85.7
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 7.0e-16 86.7 63 85.7
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 7.0e-16 86.7 63 85.7
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 1.2e-15 85.9 63 82.5
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 1.2e-15 85.9 63 82.5
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 1.2e-15 85.9 63 82.5
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 1.6e-15 85.5 63 82.5
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 3.5e-15 84.3 63 82.5
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 1.0e-14 82.8 63 84.1
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 2.3e-14 81.6 63 79.4
A05p02620 Brassica napus HOM05D000031 ORTHO05D001033 3.0e-14 81.3 47 97.9
BolC4t21953H Brassica oleracea HOM05D000031 ORTHO05D001033 3.0e-14 81.3 47 97.9
BraA05t19255Z Brassica rapa HOM05D000031 ORTHO05D001033 3.0e-14 81.3 47 97.9
C04p03120 Brassica napus HOM05D000031 ORTHO05D001033 8.6e-14 79.7 47 95.7
Carub.0005s2453 Capsella rubella HOM05D005524 ORTHO05D005392 8.1e-12 73.2 63 74.6
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 8.1e-12 73.2 62 71.0
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.1e-11 71.2 62 69.4
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 6.8e-11 70.1 62 69.4
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 8.9e-11 69.7 67 68.7
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.2e-10 69.3 62 67.7
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 1.5e-10 68.9 63 66.7
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 2.6e-10 68.2 67 67.2
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 2.6e-10 68.2 63 66.7
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 3.4e-10 67.8 64 67.2
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 4.4e-10 67.4 62 67.7
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.3e-09 65.9 62 66.1
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 2.2e-09 65.1 63 65.1
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.7e-09 64.3 63 61.9
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 1.1e-08 62.8 61 67.2
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 1.4e-08 62.4 58 67.2
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 1.9e-08 62.0 65 63.1
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.9e-08 62.0 63 61.9
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 62.9
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 2.4e-08 61.6 62 66.1
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 3.2e-08 61.2 67 58.2
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 3.2e-08 61.2 65 61.5
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 5.4e-08 60.5 62 58.1
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 5.4e-08 60.5 65 61.5
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 5.4e-08 60.5 63 61.9
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 5.4e-08 60.5 64 56.2
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 5.4e-08 60.5 65 61.5
Lalb_Chr19g0132101 Lupinus albus HOM05D005524 ORTHO05D005392 7.1e-08 60.1 60 61.7
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.2e-07 59.3 62 56.5
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 1.2e-07 59.3 64 56.2
Lalb_Chr03g0033981 Lupinus albus HOM05D005524 ORTHO05D005392 1.2e-07 59.3 60 60.0
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 1.2e-07 59.3 65 61.5
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.6e-07 58.9 62 58.1
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 2.7e-07 58.2 65 58.5
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 2.7e-07 58.2 62 58.1
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 2.7e-07 58.2 63 58.7
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 2.7e-07 58.2 63 55.6
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 3.5e-07 57.8 65 60.0
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 4.6e-07 57.4 62 59.7
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 6.0e-07 57.0 62 54.8
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 7.8e-07 56.6 62 56.5
Gohir.D11G327300 Gossypium hirsutum HOM05D008862 ORTHO05D005392 7.8e-07 56.6 79 50.6
Gorai.007G358200 Gossypium raimondii HOM05D008862 ORTHO05D005392 1.3e-06 55.8 79 49.4
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 1.3e-06 55.8 60 61.7
Prupe.2G010700 Prunus persica HOM05D005524 ORTHO05D005392 2.3e-06 55.1 70 54.3
Lalb_Chr01g0008091 Lupinus albus HOM05D005524 ORTHO05D005392 3.9e-06 54.3 60 61.7
MBI04_g13622_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 3.9e-06 54.3 61 59.0


User provided reference genes

Program Settings