Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p68330 Brassica napus HOM05D002277 ORTHO05D001770 2.0e-85 319.3 188 100.0
BolC4t28335H Brassica oleracea HOM05D002277 ORTHO05D001770 4.8e-84 314.7 188 98.9
BcaC02g07305 Brassica carinata HOM05D002277 ORTHO05D001770 5.3e-83 311.2 186 98.9
A04p30940 Brassica napus HOM05D002277 ORTHO05D001770 2.7e-79 298.9 188 93.1
BraA04t18552Z Brassica rapa HOM05D002277 ORTHO05D001770 2.7e-79 298.9 188 93.1
BcaB06g29146 Brassica carinata HOM05D002277 ORTHO05D001770 3.4e-69 265.4 182 89.6
Sp4g22820 Schrenkiella parvula HOM05D002277 ORTHO05D001770 9.1e-67 257.3 192 77.6
C04p02010 Brassica napus HOM05D002277 ORTHO05D001770 4.2e-64 248.4 202 72.8
BraA05t19171Z Brassica rapa HOM05D002277 ORTHO05D001770 4.2e-64 248.4 188 76.1
A03p22770 Brassica napus HOM05D002277 ORTHO05D001770 9.5e-64 247.3 188 76.6
BraA03t11501Z Brassica rapa HOM05D002277 ORTHO05D001770 9.5e-64 247.3 188 76.6
A05p01740 Brassica napus HOM05D002277 ORTHO05D001770 2.8e-63 245.7 202 72.8
Thhalv10017268m.g Eutrema salsugineum HOM05D002277 ORTHO05D001770 4.7e-63 245.0 189 84.7
BcaC02g12718 Brassica carinata HOM05D002277 ORTHO05D001770 1.8e-62 243.0 192 72.4
C03p27010 Brassica napus HOM05D002277 ORTHO05D001770 7.5e-61 237.7 188 73.9
BcaB01g03537 Brassica carinata HOM05D002277 ORTHO05D001770 2.0e-58 229.6 190 74.2
CARHR135590 Cardamine hirsuta HOM05D002277 ORTHO05D001770 2.5e-56 222.6 194 77.3
AL4G38320 Arabidopsis lyrata HOM05D002277 ORTHO05D001770 9.5e-56 220.7 187 78.6
AT2G40475 Arabidopsis thaliana HOM05D002277 ORTHO05D001770 2.3e-54 216.1 188 79.3
BolC4t21852H Brassica oleracea HOM05D002277 ORTHO05D001770 1.5e-53 213.4 161 74.5
Carub.0004s2273 Capsella rubella HOM05D002277 ORTHO05D001770 2.4e-51 206.1 193 73.6
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 1.1e-48 197.2 169 72.2
Aa31LG5G19050 Aethionema arabicum HOM05D002277 ORTHO05D001770 5.1e-33 145.2 180 55.6
THA.LOC104824354 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 7.8e-26 121.3 201 48.8
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 3.5e-18 95.9 203 41.4
BolC3t15083H Brassica oleracea HOM05D002277 ORTHO05D001770 8.7e-17 91.3 59 78.0
CARHR166420 Cardamine hirsuta HOM05D010959 ORTHO05D001770 1.8e-14 83.6 169 39.1
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 1.2e-13 80.9 52 65.4
Thhalv10006243m.g Eutrema salsugineum HOM05D010959 ORTHO05D001770 1.2e-13 80.9 172 40.1
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 2.0e-13 80.1 189 37.6
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 4.5e-13 79.0 165 37.0
Sp5g06240 Schrenkiella parvula HOM05D010959 ORTHO05D001770 7.6e-13 78.2 177 40.1
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.7e-12 77.0 187 33.7
A09p49240 Brassica napus HOM05D010959 ORTHO05D001770 1.7e-12 77.0 187 38.5
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 2.2e-12 76.6 196 35.7
BraA09t40377Z Brassica rapa HOM05D010959 ORTHO05D001770 2.9e-12 76.3 187 38.5
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.4e-11 73.2 206 34.0
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 2.4e-11 73.2 206 34.0
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 2.4e-11 73.2 189 39.7
C08p31590 Brassica napus HOM05D010959 ORTHO05D001770 7.1e-11 71.6 187 39.0
BolC8t50780H Brassica oleracea HOM05D010959 ORTHO05D001770 7.1e-11 71.6 187 39.0
BcaC07g39943 Brassica carinata HOM05D010959 ORTHO05D001770 1.2e-10 70.9 188 37.2
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.2e-10 70.9 199 37.7
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 1.6e-10 70.5 54 63.0
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.6e-10 70.5 191 39.8
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 2.1e-10 70.1 177 36.2
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 2.1e-10 70.1 170 34.1
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 2.1e-10 70.1 207 35.7
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 2.1e-10 70.1 186 33.3
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 2.1e-10 70.1 158 35.4
Aa31LG10G11170 Aethionema arabicum HOM05D010959 ORTHO05D001770 2.7e-10 69.7 179 42.5
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 2.7e-10 69.7 191 40.3
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 2.7e-10 69.7 160 36.9
FAN06G1120 Fragaria x ananassa HOM05D002277 ORTHO05D001770 2.7e-10 69.7 207 36.2
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.5e-10 69.3 207 33.3
BcaB02g07660 Brassica carinata HOM05D010959 ORTHO05D001770 4.6e-10 68.9 100 44.0
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 6.0e-10 68.6 162 41.4
Lsat_1_v5_gn_2_125460 Lactuca sativa HOM05D002277 ORTHO05D001770 7.9e-10 68.2 179 31.3
Carub.0005s2304 Capsella rubella HOM05D010959 ORTHO05D001770 1.0e-09 67.8 150 42.7
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 1.0e-09 67.8 189 30.2
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.0e-09 67.8 193 37.3
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 1.3e-09 67.4 200 35.0
CiPaw.10G163800 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.3e-09 66.6 161 41.6
BolC6t37519H Brassica oleracea HOM05D010959 ORTHO05D001770 3.0e-09 66.2 87 47.1
RcHm_v2.0_Chr1g0371651 Rosa chinensis HOM05D002277 ORTHO05D001770 3.0e-09 66.2 178 38.8
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.0e-09 66.2 193 36.8
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 3.9e-09 65.9 213 36.6
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 3.9e-09 65.9 192 34.9
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 3.9e-09 65.9 111 39.6
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.9e-09 65.9 158 32.3
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 3.9e-09 65.9 184 37.5
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 3.9e-09 65.9 156 33.3
Ah.16g104180 Amaranthus hybridus HOM05D002277 ORTHO05D001770 5.1e-09 65.5 205 33.2
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 5.1e-09 65.5 165 34.5
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 5.1e-09 65.5 102 44.1
arahy.Tifrunner.gnm1.ann1.H4MVMY Arachis hypogaea HOM05D002277 ORTHO05D001770 6.7e-09 65.1 55 58.2
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 6.7e-09 65.1 154 40.9
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 6.7e-09 65.1 54 59.3
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 6.7e-09 65.1 108 41.7
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 6.7e-09 65.1 54 61.1
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 6.7e-09 65.1 207 37.2
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 6.7e-09 65.1 179 35.2
BcaC08g44774 Brassica carinata HOM05D010959 ORTHO05D001770 8.7e-09 64.7 87 46.0
A07p22870 Brassica napus HOM05D010959 ORTHO05D001770 8.7e-09 64.7 86 44.2
C06p23450 Brassica napus HOM05D010959 ORTHO05D001770 8.7e-09 64.7 87 46.0
BraA07t29953Z Brassica rapa HOM05D010959 ORTHO05D001770 8.7e-09 64.7 86 44.2
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 8.7e-09 64.7 54 57.4
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 8.7e-09 64.7 198 33.8
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 8.7e-09 64.7 138 37.7
AT3G56260 Arabidopsis thaliana HOM05D010959 ORTHO05D001770 1.1e-08 64.3 164 38.4
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 1.1e-08 64.3 54 57.4
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 1.1e-08 64.3 169 34.3
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 1.5e-08 63.9 53 62.3
Phvul.008G086700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.9e-08 63.5 175 31.4
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.9e-08 63.5 54 57.4
Psat7g229920 Pisum sativum HOM05D002277 ORTHO05D001770 1.9e-08 63.5 166 30.7
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.5e-08 63.2 175 36.0
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 2.5e-08 63.2 96 41.7
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 2.5e-08 63.2 100 40.0
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 3.3e-08 62.8 157 31.8
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 3.3e-08 62.8 161 32.9
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 3.3e-08 62.8 54 57.4
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 4.3e-08 62.4 163 31.9
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 4.3e-08 62.4 100 42.0
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 4.3e-08 62.4 161 32.3
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.6e-08 62.0 156 32.1
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 5.6e-08 62.0 157 32.5
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 5.6e-08 62.0 96 41.7
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 7.4e-08 61.6 148 31.8
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.4e-08 61.6 158 31.0
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.4e-08 61.6 185 30.3
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 7.4e-08 61.6 174 29.9
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 7.4e-08 61.6 167 40.1
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 9.6e-08 61.2 155 38.1
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 9.6e-08 61.2 160 36.9
AL5G37580 Arabidopsis lyrata HOM05D010959 ORTHO05D001770 1.3e-07 60.8 77 42.9
EL10Ac2g04267 Beta vulgaris HOM05D002277 ORTHO05D001770 1.3e-07 60.8 177 28.2
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 1.3e-07 60.8 53 56.6
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 1.3e-07 60.8 103 37.9
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 1.3e-07 60.8 103 37.9
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 1.3e-07 60.8 103 37.9
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 1.3e-07 60.8 161 28.0
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 1.3e-07 60.8 95 43.2
BcaB01g00009 Brassica carinata HOM05D010959 ORTHO05D001770 1.6e-07 60.5 173 39.3
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.6e-07 60.5 190 31.1
Medtr4g029130 Medicago truncatula HOM05D002277 ORTHO05D001770 1.6e-07 60.5 182 30.2
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 1.6e-07 60.5 158 40.5
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 2.1e-07 60.1 104 34.6
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 2.1e-07 60.1 175 36.0
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.1e-07 60.1 169 32.0
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 2.8e-07 59.7 160 33.1
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 2.8e-07 59.7 107 36.4
Medtr5g083970 Medicago truncatula HOM05D002277 ORTHO05D001770 2.8e-07 59.7 49 59.2
CDE07G2070 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 3.7e-07 59.3 53 54.7
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.7e-07 59.3 188 29.8
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.7e-07 59.3 156 32.1
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 3.7e-07 59.3 167 32.3
CANSAT56G3800 Cannabis sativa HOM05D002277 ORTHO05D001770 4.8e-07 58.9 53 54.7
TWI73G0449 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 4.8e-07 58.9 47 63.8
Sed0016478 Sechium edule HOM05D002277 ORTHO05D001770 6.2e-07 58.5 55 60.0
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 8.1e-07 58.2 144 34.0
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 8.1e-07 58.2 167 31.1
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 1.1e-06 57.8 53 50.9
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 1.1e-06 57.8 53 54.7
Nitab4.5_0007794g0020 Nicotiana tabacum HOM05D002277 ORTHO05D001770 1.1e-06 57.8 163 44.2
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.4e-06 57.4 156 32.7
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 1.4e-06 57.4 160 31.2
Sc11g0005700 Simmondsia chinensis HOM05D002277 ORTHO05D001770 1.4e-06 57.4 181 37.6
Haze_02921 Corylus avellana HOM05D002277 ORTHO05D001770 1.8e-06 57.0 48 60.4
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.8e-06 57.0 54 57.4
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 2.4e-06 56.6 53 50.9
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 2.4e-06 56.6 160 31.2
Oeu003236.1 Olea europaea HOM05D002277 ORTHO05D001770 2.4e-06 56.6 178 27.5
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 2.4e-06 56.6 54 51.9
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 2.4e-06 56.6 54 51.9
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.1e-06 56.2 54 53.7
Peaxi162Scf00167g00134 Petunia axillaris HOM05D002277 ORTHO05D001770 3.1e-06 56.2 158 31.0
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 3.1e-06 56.2 53 50.9
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 4.0e-06 55.8 151 32.5
CDE04G2321 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 4.0e-06 55.8 53 54.7
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 4.0e-06 55.8 53 49.1
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 4.0e-06 55.8 171 40.4
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 5.3e-06 55.5 53 50.9
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 5.3e-06 55.5 53 47.2
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 5.3e-06 55.5 104 37.5
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 5.3e-06 55.5 53 52.8
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 5.3e-06 55.5 191 29.8
AL6G10240 Arabidopsis lyrata HOM05D010646 ORTHO05D001770 9.0e-06 54.7 41 70.7
Carub.0006s0004 Capsella rubella HOM05D010646 ORTHO05D001770 9.0e-06 54.7 65 52.3
Lj3g0001226 Lotus japonicus HOM05D002277 ORTHO05D001770 9.0e-06 54.7 170 31.2


User provided reference genes

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