Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-50 203.0 96 100.0
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.0e-50 203.0 96 100.0
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 2.0e-49 198.7 96 97.9
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 2.0e-49 198.7 96 97.9
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 5.7e-49 197.2 96 96.9
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-45 185.3 96 89.6
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 8.6e-45 183.3 96 87.5
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 8.6e-45 183.3 96 87.5
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-44 181.0 96 86.5
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 4.2e-44 181.0 96 86.5
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 5.5e-44 180.6 96 86.5
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 9.5e-44 179.9 96 84.4
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.2e-43 179.5 96 83.3
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 1.2e-41 172.9 96 82.3
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.6e-41 171.8 96 80.2
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.4e-39 165.2 97 80.4
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.4e-39 164.1 98 80.6
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 2.1e-27 125.6 87 72.4
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 8.0e-27 123.6 88 70.5
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 8.9e-26 120.2 87 66.7
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.0e-25 119.0 96 60.4
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.0e-25 119.0 87 67.8
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.3e-24 116.3 87 64.4
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.4e-24 114.0 87 64.4
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.1e-23 113.2 81 66.7
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 1.9e-23 112.5 87 66.7
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.9e-23 112.5 87 66.7
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 3.2e-23 111.7 87 66.7
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 3.2e-23 111.7 87 66.7
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 3.2e-23 111.7 87 66.7
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 5.4e-23 110.9 85 65.9
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.2e-22 109.8 80 68.8
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 3.5e-22 108.2 87 63.2
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 3.5e-22 108.2 84 63.1
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 3.5e-22 108.2 87 63.2
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 3.5e-22 108.2 87 63.2
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 3.5e-22 108.2 84 63.1
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 6.6e-21 104.0 80 60.0
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-20 103.2 80 66.2
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 5.6e-20 100.9 87 58.6
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 7.3e-20 100.5 79 60.8
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 3.6e-19 98.2 80 58.8
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 8.1e-19 97.1 78 60.3
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 8.1e-19 97.1 80 58.8
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-18 96.3 81 59.3
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 1.4e-18 96.3 81 59.3
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-18 96.3 81 59.3
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-18 95.5 81 58.0
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-18 95.5 81 55.6
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 2.3e-18 95.5 81 58.0
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 2.3e-18 95.5 81 58.0
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 2.3e-18 95.5 81 58.0
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 2.3e-18 95.5 81 58.0
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 5.2e-18 94.4 80 56.2
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 4.4e-17 91.3 80 55.0
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-16 89.7 81 55.6
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 9.2e-15 83.6 93 47.3
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 9.2e-15 83.6 80 50.0
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 9.2e-15 83.6 80 50.0
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.7e-14 82.0 88 45.5
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 4.6e-14 81.3 78 48.7
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 4.6e-14 81.3 79 49.4
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 4.6e-14 81.3 95 46.3
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.7e-13 79.3 79 50.6
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 2.3e-13 79.0 90 45.6
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.3e-13 79.0 79 49.4
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 3.0e-13 78.6 79 45.6
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 3.0e-13 78.6 69 53.6
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 3.9e-13 78.2 79 46.8
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 5.1e-13 77.8 89 46.1
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 6.6e-13 77.4 79 45.6
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 6.6e-13 77.4 82 51.2
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 6.6e-13 77.4 100 39.0
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 8.6e-13 77.0 79 46.8
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.1e-12 76.6 79 45.6
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.1e-12 76.6 84 46.4
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.5e-12 76.3 97 43.3
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.5e-12 76.3 79 48.1
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.9e-12 75.9 79 49.4
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 1.9e-12 75.9 85 45.9
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.9e-12 75.9 79 48.1
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 1.9e-12 75.9 91 41.8
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.9e-12 75.9 90 43.3
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 2.5e-12 75.5 89 44.9
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 2.5e-12 75.5 80 46.2
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 3.3e-12 75.1 92 41.3
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.3e-12 75.1 80 50.0
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 3.3e-12 75.1 84 47.6
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 4.3e-12 74.7 90 45.6
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 5.6e-12 74.3 77 48.1
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 7.3e-12 73.9 85 43.5
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 7.3e-12 73.9 79 46.8
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 9.6e-12 73.6 84 42.9
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 9.6e-12 73.6 80 45.0
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 9.6e-12 73.6 90 40.0
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.2e-11 73.2 84 42.9
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.2e-11 73.2 90 44.4
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.2e-11 73.2 90 42.2
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.2e-11 73.2 84 44.0
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 1.2e-11 73.2 92 42.4
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.6e-11 72.8 79 46.8
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.1e-11 72.4 90 43.3
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.1e-11 72.4 90 43.3
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.1e-11 72.4 85 43.5
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.1e-11 72.4 88 45.5
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.1e-11 72.4 84 44.0
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.8e-11 72.0 88 44.3
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.8e-11 72.0 84 42.9
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 2.8e-11 72.0 84 42.9
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.8e-11 72.0 84 42.9
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.8e-11 72.0 74 48.6
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 2.8e-11 72.0 92 41.3
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 4.7e-11 71.2 79 45.6
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 4.7e-11 71.2 72 47.2
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 4.7e-11 71.2 85 41.2
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 4.7e-11 71.2 90 42.2
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 8.1e-11 70.5 90 41.1
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.1e-10 70.1 90 41.1
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 1.1e-10 70.1 80 42.5
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.4e-10 69.7 89 42.7
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.4e-10 69.7 90 42.2
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.4e-10 69.7 90 42.2
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.8e-10 69.3 90 40.0
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.8e-10 69.3 76 43.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.8e-10 69.3 85 42.4
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.8e-10 69.3 88 42.0
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.8e-10 69.3 80 42.5
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.8e-10 69.3 80 42.5
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.4e-10 68.9 80 42.5
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 3.1e-10 68.6 77 48.1
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 4.0e-10 68.2 86 40.7
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 6.8e-10 67.4 90 40.0
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 6.8e-10 67.4 87 37.9
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 6.8e-10 67.4 89 39.3
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 6.8e-10 67.4 72 47.2
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.2e-09 66.6 90 38.9
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.2e-09 66.6 89 42.7
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.2e-09 66.6 73 49.3
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.2e-09 66.6 80 41.2
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.2e-09 66.6 84 41.7
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 1.2e-09 66.6 95 38.9
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.5e-09 66.2 85 42.4
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 2.0e-09 65.9 90 41.1
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 2.0e-09 65.9 89 39.3
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 2.0e-09 65.9 84 40.5
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 2.6e-09 65.5 90 38.9
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 3.4e-09 65.1 80 43.8
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 5.8e-09 64.3 90 41.1
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 7.6e-09 63.9 74 47.3
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 7.6e-09 63.9 91 35.2
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 7.6e-09 63.9 91 35.2
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 9.9e-09 63.5 73 43.8
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 9.9e-09 63.5 73 43.8
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.3e-08 63.2 85 37.6
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.3e-08 63.2 89 40.4
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.7e-08 62.8 74 39.2
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 2.2e-08 62.4 81 43.2
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.2e-08 62.4 97 39.2
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.9e-08 62.0 75 46.7
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 2.9e-08 62.0 80 41.2
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.9e-08 62.0 84 39.3
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 4.9e-08 61.2 74 40.5
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.4e-08 60.8 89 37.1
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 6.4e-08 60.8 85 40.0
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 6.4e-08 60.8 74 40.5
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 6.4e-08 60.8 75 41.3
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 8.4e-08 60.5 82 41.5
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 8.4e-08 60.5 74 44.6
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.4e-07 59.7 84 41.7
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 2.4e-07 58.9 79 40.5
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.4e-07 58.9 75 38.7
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 4.2e-07 58.2 77 40.3
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 4.2e-07 58.2 86 39.5
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.2e-07 58.2 75 37.3
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 9.3e-07 57.0 77 40.3
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 1.6e-06 56.2 84 36.9


User provided reference genes

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