Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 9.2e-93 343.6 178 100.0
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 1.2e-79 300.1 199 83.4
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 1.2e-79 300.1 199 83.4
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 4.9e-78 294.7 198 81.3
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 4.9e-78 294.7 196 81.1
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.3e-75 285.8 194 80.4
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 2.5e-74 282.3 196 76.5
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 2.5e-74 282.3 179 84.9
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 2.5e-74 282.3 179 84.9
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 4.3e-74 281.6 193 78.2
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 5.6e-74 281.2 206 74.8
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 1.6e-73 279.6 210 74.3
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 1.6e-73 279.6 193 77.7
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 2.1e-73 279.3 193 77.7
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 2.8e-73 278.9 208 73.6
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 6.2e-73 277.7 193 76.7
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 5.8e-71 271.2 199 75.4
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 1.3e-70 270.0 202 75.7
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 4.1e-69 265.0 200 73.5
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 2.1e-68 262.7 202 70.8
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 3.5e-68 261.9 191 74.9
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 7.8e-68 260.8 190 74.7
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.7e-67 259.6 208 69.7
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 3.0e-67 258.8 193 73.6
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 6.6e-67 257.7 179 77.1
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.9e-66 256.1 193 72.0
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 3.3e-66 255.4 228 64.0
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 5.8e-63 244.6 191 68.1
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 6.4e-62 241.1 192 67.7
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 6.4e-62 241.1 193 67.9
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 5.4e-61 238.0 186 68.8
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 1.2e-60 236.9 193 65.8
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.6e-60 236.5 193 66.8
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 2.7e-60 235.7 193 67.4
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 2.7e-60 235.7 193 67.4
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 1.3e-59 233.4 184 67.9
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 3.9e-59 231.9 183 67.8
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 3.9e-59 231.9 183 67.8
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 8.7e-59 230.7 193 64.2
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 1.9e-58 229.6 202 64.4
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 3.3e-58 228.8 196 61.2
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 5.6e-58 228.0 191 64.4
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 5.6e-58 228.0 184 66.8
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 5.6e-58 228.0 184 64.7
BraA04t18491Z Brassica rapa HOM05D003476 ORTHO05D004057 9.6e-58 227.3 218 63.3
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 9.6e-58 227.3 193 64.8
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 1.6e-57 226.5 199 62.8
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 1.6e-57 226.5 184 67.4
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 1.6e-57 226.5 183 69.9
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 2.8e-57 225.7 181 66.3
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 4.8e-57 224.9 196 65.8
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 6.2e-57 224.6 184 63.6
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 8.1e-57 224.2 178 68.5
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 1.1e-56 223.8 184 66.3
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.1e-56 223.8 183 65.0
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 1.4e-56 223.4 187 64.7
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 1.8e-56 223.0 193 63.2
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 1.8e-56 223.0 198 64.1
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.8e-56 223.0 190 62.6
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 2.4e-56 222.6 184 66.3
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 2.4e-56 222.6 184 64.7
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 4.0e-56 221.9 193 63.2
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 9.0e-56 220.7 183 69.4
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 9.0e-56 220.7 185 63.2
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 9.0e-56 220.7 198 61.1
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 9.0e-56 220.7 184 64.7
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 1.5e-55 219.9 169 70.4
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 1.5e-55 219.9 194 62.4
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 2.0e-55 219.5 191 61.8
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 4.5e-55 218.4 186 65.1
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 4.5e-55 218.4 193 63.2
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 4.5e-55 218.4 193 63.2
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 4.5e-55 218.4 191 60.2
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 5.8e-55 218.0 181 62.4
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 9.9e-55 217.2 193 61.7
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 1.3e-54 216.9 184 64.7
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 1.7e-54 216.5 193 61.1
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 1.7e-54 216.5 190 62.6
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 2.2e-54 216.1 173 66.5
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 3.8e-54 215.3 184 62.0
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 3.8e-54 215.3 207 58.5
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 1.4e-53 213.4 198 59.6
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 1.4e-53 213.4 195 59.5
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 3.2e-53 212.2 205 57.6
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 3.2e-53 212.2 181 62.4
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 4.2e-53 211.8 183 61.7
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 9.3e-53 210.7 186 59.1
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 1.2e-52 210.3 192 59.4
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 1.2e-52 210.3 188 61.2
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 1.6e-52 209.9 176 65.9
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 1.6e-52 209.9 185 63.2
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 2.7e-52 209.1 175 66.3
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 3.5e-52 208.8 224 52.2
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 6.0e-52 208.0 200 57.0
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 7.9e-52 207.6 185 58.4
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 1.3e-51 206.8 184 62.5
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 3.0e-51 205.7 177 59.3
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 8.7e-51 204.1 174 62.1
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 1.1e-50 203.8 182 62.6
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 1.9e-50 203.0 182 62.1
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 2.5e-50 202.6 198 57.1
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 3.3e-50 202.2 169 62.7
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 4.3e-50 201.8 178 59.0
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 2.8e-49 199.1 184 58.7
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 2.8e-49 199.1 177 59.9
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 3.7e-49 198.7 235 51.9
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 8.1e-49 197.6 177 60.5
CARHR134880 Cardamine hirsuta HOM05D003476 ORTHO05D004057 4.0e-48 195.3 109 89.0
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 5.3e-48 194.9 184 58.7
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 1.2e-47 193.7 169 62.7
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.5e-47 193.4 167 61.7
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 1.5e-47 193.4 184 58.2
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 5.8e-47 191.4 175 60.6
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.9e-46 189.1 189 56.6
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 2.9e-46 189.1 178 54.5
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 4.9e-46 188.3 170 62.4
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 6.4e-46 188.0 177 56.5
Dinv20956 Davidia involucrata HOM05D003476 ORTHO05D004057 1.2e-44 183.7 167 59.3
Dinv20987 Davidia involucrata HOM05D003476 ORTHO05D004057 1.2e-44 183.7 167 59.3
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 6.0e-44 181.4 168 58.9
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 6.0e-44 181.4 163 62.6
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 7.9e-44 181.0 217 52.1
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 1.8e-43 179.9 156 66.0
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 1.5e-42 176.8 180 55.0
CARHR253310 Cardamine hirsuta HOM05D003476 ORTHO05D004057 2.5e-42 176.0 107 81.3
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.8e-41 172.6 177 53.1
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 1.1e-40 170.6 147 63.9
TAR633G1753 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.8e-40 169.9 106 77.4
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 6.9e-40 167.9 194 50.5
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 9.0e-40 167.5 189 51.9
RcHm_v2.0_Chr1g0369411 Rosa chinensis HOM05D003476 ORTHO05D004057 2.6e-39 166.0 108 78.7
HanXRQChr08g0222271 Helianthus annuus HOM05D003476 ORTHO05D004057 4.2e-37 158.7 105 74.3
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 5.5e-37 158.3 184 46.2
Cc02_g06910 Coffea canephora HOM05D003476 ORTHO05D004057 7.1e-37 157.9 107 71.0
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 7.1e-37 157.9 180 51.7
MD08G1058200 Malus domestica HOM05D003476 ORTHO05D004057 2.3e-35 152.9 110 71.8
SalBow6G0374 Salvia bowleyana HOM05D003476 ORTHO05D004057 2.5e-34 149.4 106 68.9
FAN27G3190 Fragaria x ananassa HOM05D003476 ORTHO05D004057 4.8e-33 145.2 108 67.6
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 1.8e-32 143.3 154 55.8
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.8e-32 143.3 132 57.6
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 9.0e-32 141.0 330 34.8
MBI14_g36886_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.5e-31 140.2 160 49.4
Lj1A950T60 Lonicera japonica HOM05D003476 ORTHO05D004057 5.1e-27 125.2 92 69.6
AagrBONN_evm.TU.Sc2ySwM_228.5499 Anthoceros agrestis HOM05D003476 ORTHO05D004057 7.4e-26 121.3 94 64.9
MBI14_g13584_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.7e-25 119.0 79 70.9
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 8.2e-25 117.9 136 49.3
CBR_g48322 Chara braunii HOM05D003476 ORTHO05D004057 1.1e-24 117.5 107 54.2
SalBow6G0036 Salvia bowleyana HOM05D003476 ORTHO05D004057 9.1e-24 114.4 78 70.5
MBI16_g37731_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.0e-23 113.2 75 69.3
vmacro06994 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 2.6e-23 112.8 79 70.9
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 8.5e-22 107.8 165 40.0
ATR0618G195 Amborella trichopoda HOM05D003476 ORTHO05D004057 3.2e-21 105.9 66 72.7
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 1.0e-19 100.9 169 39.6
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.8e-19 100.1 59 86.4
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 5.1e-19 98.6 61 83.6
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 5.1e-19 98.6 145 45.5
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 1.1e-18 97.4 179 41.3
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 5.7e-18 95.1 112 47.3
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 9.7e-18 94.4 61 77.0
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 9.7e-18 94.4 104 52.9
Solyc04g072110.4 Solanum lycopersicum HOM05D003476 ORTHO05D004057 3.7e-17 92.4 59 71.2
Prupe.2G246200 Prunus persica HOM05D003476 ORTHO05D004057 6.3e-17 91.7 61 73.8
Oeu036632.1 Olea europaea HOM05D003476 ORTHO05D004057 6.9e-16 88.2 59 74.6
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 4.5e-15 85.5 62 69.4
MBI08_g04934_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.0e-14 84.3 68 60.3
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 2.9e-14 82.8 61 65.6
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 3.8e-14 82.4 61 65.6
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 1.2e-12 77.4 60 66.7
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 1.6e-12 77.0 49 75.5
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 2.7e-12 76.3 54 66.7
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 2.7e-12 76.3 59 66.1
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.1e-12 75.1 61 63.9
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 6.1e-12 75.1 52 67.3
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 1.0e-11 74.3 64 60.9
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 1.0e-11 74.3 62 61.3
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 1.8e-11 73.6 52 65.4
Hund03462 Selenicereus undatus HOM05D003476 ORTHO05D004057 5.2e-11 72.0 92 47.8
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 1.1e-10 70.9 61 57.4
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.5e-10 70.5 52 65.4
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 3.3e-10 69.3 61 59.0
Cre12.g524200 Chlamydomonas reinhardtii HOM05D003476 ORTHO05D004057 4.4e-10 68.9 177 29.9
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 4.4e-10 68.9 53 64.2
Zm00001eb420270 Zea mays HOM05D000224 ORTHO05D002390 4.4e-10 68.9 54 63.0
MBI14_g33799_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 5.7e-10 68.6 140 37.9
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 2.2e-09 66.6 54 57.4
BolC3t15040H Brassica oleracea HOM05D003476 ORTHO05D004057 2.0e-07 60.1 35 85.7
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 2.6e-07 59.7 42 66.7


User provided reference genes

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