Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 7.5e-40 166.8 87 100.0
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 7.5e-40 166.8 87 100.0
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 1.9e-38 162.2 88 98.9
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 1.9e-38 162.2 88 98.9
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 2.4e-38 161.8 88 97.7
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 4.1e-38 161.0 88 97.7
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 2.5e-35 151.8 85 91.8
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 9.5e-35 149.8 85 89.4
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 9.5e-35 149.8 85 90.6
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 6.2e-34 147.1 85 88.2
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 4.0e-33 144.4 85 87.1
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 4.0e-33 144.4 85 88.2
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 8.3e-31 136.7 86 83.7
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 6.0e-29 130.6 89 75.3
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 1.0e-28 129.8 89 75.3
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 1.0e-28 129.8 89 75.3
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 1.3e-28 129.4 85 74.1
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 1.3e-28 129.4 85 74.1
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 3.0e-28 128.3 89 74.2
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 3.9e-28 127.9 85 74.1
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 3.9e-28 127.9 85 74.1
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 3.9e-28 127.9 85 72.9
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 5.1e-28 127.5 86 75.6
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 6.6e-28 127.1 82 76.8
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 1.1e-27 126.3 89 75.3
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 1.5e-27 125.9 84 76.2
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 1.9e-27 125.6 89 73.0
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 1.9e-27 125.6 89 74.2
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 2.5e-27 125.2 82 76.8
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 3.3e-27 124.8 82 75.6
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 4.3e-27 124.4 89 71.9
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 4.3e-27 124.4 84 75.0
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 4.3e-27 124.4 84 76.2
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 5.6e-27 124.0 89 71.9
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 9.5e-27 123.2 86 75.6
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 1.2e-26 122.9 85 74.1
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 1.6e-26 122.5 82 73.2
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 2.1e-26 122.1 84 72.6
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 2.8e-26 121.7 83 73.5
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 2.8e-26 121.7 89 69.7
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 3.6e-26 121.3 83 73.5
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 3.6e-26 121.3 82 73.2
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 6.2e-26 120.6 84 69.0
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 6.2e-26 120.6 84 69.0
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 6.2e-26 120.6 82 69.5
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 6.2e-26 120.6 89 68.5
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 8.1e-26 120.2 88 71.6
Ca_24471_v3 Cicer arietinum L. HOM05D007049 ORTHO05D008896 8.1e-26 120.2 82 72.0
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 8.1e-26 120.2 86 69.8
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 1.1e-25 119.8 89 69.7
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.4e-25 119.4 82 73.2
FAN18G1167 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.8e-25 119.0 85 69.4
FAN18G2563 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.8e-25 119.0 85 69.4
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 2.3e-25 118.6 84 70.2
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 3.1e-25 118.2 82 73.2
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 3.1e-25 118.2 82 70.7
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 4.0e-25 117.9 84 70.2
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 5.2e-25 117.5 88 70.5
Psat7g180120 Pisum sativum HOM05D007049 ORTHO05D008896 5.2e-25 117.5 89 68.5
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 6.8e-25 117.1 89 71.9
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 1.2e-24 116.3 89 69.7
Psat7g180080 Pisum sativum HOM05D007049 ORTHO05D008896 1.2e-24 116.3 89 67.4
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 1.2e-24 116.3 89 67.4
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 1.2e-24 116.3 89 67.4
CANSAT25G3584 Cannabis sativa HOM05D007049 ORTHO05D008896 2.0e-24 115.5 81 74.1
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 2.0e-24 115.5 81 72.8
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 2.0e-24 115.5 79 70.9
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 2.0e-24 115.5 79 77.2
arahy.Tifrunner.gnm1.ann1.6H88WF Arachis hypogaea HOM05D007049 ORTHO05D008896 2.6e-24 115.2 86 66.3
CsaV3_5G039970 Cucumis sativus L. HOM05D007049 ORTHO05D008896 3.4e-24 114.8 82 69.5
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 3.4e-24 114.8 89 66.3
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 3.4e-24 114.8 89 66.3
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 4.4e-24 114.4 89 65.2
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 5.8e-24 114.0 89 66.3
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 7.5e-24 113.6 87 69.0
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 9.9e-24 113.2 84 73.8
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 1.3e-23 112.8 82 68.3
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 2.2e-23 112.1 81 70.4
Psat7g195680 Pisum sativum HOM05D007049 ORTHO05D008896 2.2e-23 112.1 89 67.4
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 2.9e-23 111.7 83 63.9
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 3.7e-23 111.3 88 64.8
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 4.9e-23 110.9 84 66.7
ECA248G1776 Erigeron canadensis HOM05D007049 ORTHO05D008896 4.9e-23 110.9 85 69.4
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 6.4e-23 110.5 82 67.1
unitig_46.g17984 Utricularia gibba HOM05D007049 ORTHO05D008896 8.3e-23 110.2 85 67.1
arahy.Tifrunner.gnm1.ann1.CT79FY Arachis hypogaea HOM05D007049 ORTHO05D008896 2.4e-22 108.6 78 67.9
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 2.4e-22 108.6 88 65.9
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 4.1e-22 107.8 88 64.8
HPP92_017350 Vanilla planifolia HOM05D007049 ORTHO05D008896 5.4e-22 107.5 82 65.9
Prupe.8G008800 Prunus persica HOM05D007049 ORTHO05D008896 7.1e-22 107.1 78 71.8
HanXRQChr10g0289041 Helianthus annuus HOM05D007049 ORTHO05D008896 9.2e-22 106.7 83 66.3
RcHm_v2.0_Chr6g0251481 Rosa chinensis HOM05D007049 ORTHO05D008896 9.2e-22 106.7 89 65.2
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 1.2e-21 106.3 77 70.1
PSO017G7166 Papaver somniferum HOM05D007049 ORTHO05D008896 1.6e-21 105.9 79 69.6
HanXRQChr04g0114811 Helianthus annuus HOM05D007049 ORTHO05D008896 2.7e-21 105.1 83 66.3
FAN04G0010 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.0e-20 103.2 73 69.9
Aqoxy3G02546 Aquilegia oxysepala HOM05D007049 ORTHO05D008896 1.3e-20 102.8 76 67.1
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 1.1e-19 99.8 81 58.0
Potri.001G018100 Populus trichocarpa HOM05D007049 ORTHO05D008896 4.3e-19 97.8 62 79.0
FAN13G1882 Fragaria x ananassa HOM05D007049 ORTHO05D008896 2.1e-18 95.5 69 68.1
SHI21473 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-18 94.7 67 68.7
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 1.8e-17 92.4 79 59.5
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 3.1e-17 91.7 79 63.3
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 5.2e-17 90.9 68 69.1
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 2.6e-16 88.6 80 56.2
Manes.01G011600 Manihot esculenta HOM05D007049 ORTHO05D008896 3.4e-16 88.2 66 72.7
SMO353G0203 Selaginella moellendorffii HOM05D007049 ORTHO05D008896 5.8e-16 87.4 76 59.2
Prupe.8G009100 Prunus persica HOM05D007049 ORTHO05D008896 1.3e-15 86.3 81 55.6
MD05G1008200 Malus domestica HOM05D007049 ORTHO05D008896 1.4e-14 82.8 66 68.2
A04p30320 Brassica napus HOM05D007049 ORTHO05D008896 1.4e-09 66.2 40 90.0
MCO05G024 Micromonas commoda HOM05D007049 ORTHO05D008896 5.8e-08 60.8 83 38.6


User provided reference genes

Program Settings