Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 3.2e-139 498.4 259 100.0
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 1.6e-117 426.4 226 96.5
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 9.2e-102 374.0 221 91.0
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.9e-94 349.7 314 65.9
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 1.9e-94 349.7 318 65.1
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 1.7e-92 343.2 314 65.6
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-90 337.0 326 63.2
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 2.5e-83 312.8 316 61.7
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 6.9e-73 278.1 273 62.3
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.4e-70 270.4 381 48.3
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 7.4e-59 231.5 135 90.4
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.4e-54 217.2 375 44.0
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 9.4e-54 214.5 374 43.3
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.0e-52 211.1 371 41.5
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 1.4e-52 210.7 386 40.9
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 6.9e-49 198.4 378 41.5
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 4.4e-43 179.1 396 39.1
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 3.3e-35 152.9 404 33.7
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 9.1e-33 144.8 401 33.9
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 1.0e-31 141.4 270 41.9
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.0e-31 141.4 97 80.4
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 1.9e-30 137.1 156 55.8
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 5.5e-30 135.6 363 31.4
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 7.2e-30 135.2 338 38.2
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 2.7e-29 133.3 329 33.1
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 3.6e-29 132.9 329 33.7
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 3.6e-29 132.9 352 33.5
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 4.7e-29 132.5 338 37.9
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 4.7e-29 132.5 371 32.3
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 6.1e-29 132.1 306 31.7
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.0e-28 131.3 333 33.3
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 2.3e-28 130.2 313 34.5
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 4.0e-28 129.4 156 53.8
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 5.2e-28 129.0 335 31.9
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.8e-28 128.3 376 30.9
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 1.5e-27 127.5 349 34.7
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.5e-27 127.5 375 31.7
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 2.0e-27 127.1 392 30.6
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 4.4e-27 125.9 382 29.8
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 5.7e-27 125.6 156 51.9
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 7.5e-27 125.2 280 33.6
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 9.7e-27 124.8 378 32.5
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.7e-26 124.0 368 30.4
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 2.2e-26 123.6 350 33.7
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.8e-26 123.2 119 54.6
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 2.8e-26 123.2 119 53.8
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 3.7e-26 122.9 359 32.6
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 3.7e-26 122.9 349 32.4
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 6.3e-26 122.1 122 54.9
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 6.3e-26 122.1 342 31.3
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.1e-25 121.3 119 52.9
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.8e-25 120.6 372 30.4
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 3.1e-25 119.8 145 47.6
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 3.1e-25 119.8 376 31.1
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 3.1e-25 119.8 141 47.5
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 4.1e-25 119.4 347 32.0
BraA08t35622Z Brassica rapa HOM05D005116 ORTHO05D005937 5.3e-25 119.0 258 39.5
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 5.3e-25 119.0 399 27.8
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 5.3e-25 119.0 342 32.2
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 5.3e-25 119.0 345 31.9
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 7.0e-25 118.6 118 53.4
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.0e-24 117.1 350 32.3
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 2.0e-24 117.1 118 55.9
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 2.0e-24 117.1 124 51.6
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 2.7e-24 116.7 348 31.3
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 2.7e-24 116.7 347 30.5
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 4.5e-24 115.9 119 49.6
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 5.9e-24 115.5 119 52.1
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 5.9e-24 115.5 119 51.3
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 5.9e-24 115.5 340 30.3
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 5.9e-24 115.5 119 51.3
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.0e-23 114.8 118 51.7
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.0e-23 114.8 340 30.3
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.3e-23 114.4 181 39.8
A08p37240 Brassica napus HOM05D005116 ORTHO05D005937 1.7e-23 114.0 258 39.5
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.7e-23 114.0 341 30.5
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 2.9e-23 113.2 356 30.3
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 3.8e-23 112.8 214 36.4
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 5.0e-23 112.5 119 49.6
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 5.0e-23 112.5 343 31.2
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 6.5e-23 112.1 356 30.9
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 8.5e-23 111.7 116 51.7
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 8.5e-23 111.7 327 31.8
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 8.5e-23 111.7 117 50.4
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.1e-22 111.3 383 26.4
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.5e-22 110.2 118 52.5
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.5e-22 110.2 118 52.5
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 5.5e-22 109.0 116 50.0
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.6e-21 107.5 219 34.7
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 2.1e-21 107.1 268 35.4
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 2.1e-21 107.1 119 48.7
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 3.6e-21 106.3 135 43.0
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.6e-21 106.3 128 45.3
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.6e-21 106.3 128 45.3
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 4.7e-21 105.9 219 34.7
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 6.1e-21 105.5 156 39.7
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.4e-20 104.4 118 45.8
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.4e-20 104.4 341 30.8
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 3.0e-20 103.2 108 50.9
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 3.0e-20 103.2 119 47.9
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.0e-20 103.2 138 44.2
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.0e-20 103.2 138 44.2
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 6.8e-20 102.1 181 37.6
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 6.8e-20 102.1 120 45.8
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 8.8e-20 101.7 346 30.3
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 1.2e-19 101.3 172 37.8
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.5e-19 100.9 264 31.8
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 2.0e-19 100.5 271 34.7
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 3.4e-19 99.8 201 34.8
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 3.4e-19 99.8 250 33.6
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.3e-18 97.8 123 46.3
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.3e-18 97.8 326 29.8
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.3e-18 97.8 116 48.3
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 2.2e-18 97.1 295 30.8
C02p64170 Brassica napus HOM05D005116 ORTHO05D005937 4.8e-18 95.9 156 44.2
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 4.8e-18 95.9 328 31.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 3.5e-16 89.7 69 75.4
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 3.5e-16 89.7 69 75.4
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 5.9e-16 89.0 118 41.5
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 7.7e-16 88.6 100 54.0
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 7.7e-16 88.6 109 46.8
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.3e-15 87.8 310 29.7
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.8e-15 86.3 111 43.2
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.1e-14 84.7 154 33.8
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.1e-14 84.7 116 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.5e-14 83.6 159 34.6
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 3.6e-13 79.7 108 35.2
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.0e-12 78.2 68 54.4
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.0e-12 76.6 323 24.8
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.6e-11 73.6 105 41.0
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 4.1e-09 66.2 67 49.3
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.2e-08 64.7 76 47.4
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.5e-08 63.2 75 48.0
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.9e-07 60.1 112 33.9
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.1e-06 58.2 32 90.6
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 9.5e-06 55.1 56 48.2


User provided reference genes

Program Settings