Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 0.0e+00 3156.3 1606 100.0
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 0.0e+00 3033.0 1618 96.0
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 0.0e+00 2848.5 1613 91.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 0.0e+00 2812.7 1618 90.3
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 0.0e+00 2348.2 1639 76.4
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 0.0e+00 2340.1 1641 75.9
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 0.0e+00 2217.2 1639 72.6
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 0.0e+00 2154.8 1638 71.7
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 0.0e+00 2114.7 1631 70.3
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 0.0e+00 2103.6 1635 70.5
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 0.0e+00 1865.5 1640 63.4
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 0.0e+00 1695.6 1145 80.3
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 0.0e+00 1556.6 1669 54.8
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 5.6e-274 948.7 1668 39.4
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 6.2e-273 945.3 1780 37.8
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 2.7e-268 929.9 1759 38.8
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 3.7e-257 892.9 1751 38.1
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 6.5e-254 882.1 1567 39.1
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 7.1e-253 878.6 1722 37.9
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 2.7e-252 876.7 1761 36.5
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 9.0e-248 861.7 1685 37.9
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.4e-245 854.4 1752 37.5
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 5.5e-245 852.4 1752 37.3
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 5.1e-243 845.9 1741 36.4
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.5e-242 844.3 1753 37.0
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 2.8e-241 840.1 1772 36.6
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 8.2e-241 838.6 1758 36.7
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 4.1e-240 836.3 1744 36.2
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 1.9e-237 827.4 1346 39.9
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 2.1e-236 823.9 1778 36.2
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.1e-232 811.6 1756 35.5
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-232 811.2 1773 35.4
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.6e-231 807.0 1770 36.1
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.5e-231 806.2 1764 35.7
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 7.7e-231 805.4 1774 35.5
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 3.8e-230 803.1 1679 34.7
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.5e-229 801.2 1759 35.6
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 1.0e-227 795.0 1840 34.2
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 1.1e-224 785.0 1645 36.7
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 2.4e-224 783.9 1760 36.1
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 5.5e-221 772.7 1703 34.5
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.2e-220 771.5 1778 34.8
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 3.6e-212 743.4 1718 33.8
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 6.8e-211 739.2 1782 35.0
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 9.8e-210 735.3 1670 35.7
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 2.2e-209 734.2 1724 33.4
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 2.2e-209 734.2 1724 33.4
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 8.3e-209 732.3 1702 34.3
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 7.0e-208 729.2 1773 33.8
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 7.7e-207 725.7 1734 34.1
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 3.8e-206 723.4 1772 34.4
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 5.6e-205 719.5 1758 33.3
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 9.5e-205 718.8 1750 34.2
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.0e-203 715.3 1248 38.1
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 1.8e-203 714.5 1721 33.8
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 2.2e-201 707.6 1384 36.3
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 2.4e-200 704.1 1710 34.0
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 2.4e-200 704.1 1796 32.9
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 3.3e-197 693.7 1266 37.0
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.1e-196 691.0 1708 33.5
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 1.8e-195 688.0 1751 33.1
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 2.9e-193 680.6 1765 33.7
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 1.6e-191 674.9 1765 33.3
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.3e-190 671.8 1784 32.8
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 2.3e-187 661.0 1327 35.6
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 3.1e-187 660.6 1611 33.0
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 1.7e-185 654.8 1711 32.4
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 2.2e-185 654.4 1269 36.1
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.9e-184 651.4 2076 29.9
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 1.7e-182 644.8 1783 32.3
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 3.3e-181 640.6 1690 32.4
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 7.3e-181 639.4 1747 31.5
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 4.7e-180 636.7 1853 31.5
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 6.8e-179 632.9 1665 32.4
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 6.4e-177 626.3 1710 32.7
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 4.6e-175 620.2 1276 35.0
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.1e-172 611.3 1681 32.2
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 6.8e-171 606.3 1640 32.2
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 2.6e-170 604.4 1319 34.3
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 4.4e-170 603.6 1736 32.0
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 3.2e-168 597.4 813 43.3
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 3.0e-166 590.9 819 41.8
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 4.8e-164 583.6 674 48.7
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 4.8e-164 583.6 1732 30.4
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 4.9e-161 573.5 1663 31.0
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.4e-160 572.0 1660 31.6
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.9e-157 561.6 1484 33.2
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 5.5e-144 516.9 636 45.6
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 7.1e-144 516.5 798 39.3
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 4.3e-141 507.3 1703 29.4
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 3.4e-138 497.7 1739 29.3
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 5.0e-137 493.8 674 44.2
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.2e-132 478.4 1808 27.8
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 3.4e-130 471.1 1614 28.4
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 7.9e-119 433.3 1375 31.3
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 5.3e-107 394.0 1649 27.0
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.9e-96 359.0 944 30.4
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 8.9e-86 323.6 411 44.5
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 8.3e-76 290.4 541 38.1
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.3e-70 272.3 1087 28.8
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 2.6e-69 268.9 633 30.3
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 4.1e-67 261.5 893 27.2
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 4.3e-64 251.5 623 32.9
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.7e-60 239.6 539 32.3
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 7.8e-58 230.7 454 31.5
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.3e-52 213.4 1081 26.4
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 2.4e-51 209.1 817 26.4
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 2.1e-47 196.1 1433 24.0
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 1.5e-45 189.9 137 68.6
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.5e-40 173.3 606 32.8
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.1e-34 152.9 743 27.2
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.8e-22 113.2 130 43.8
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 5.0e-20 105.1 655 22.3
AL3G49900 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 5.5e-19 101.7 67 77.6
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.6e-18 100.1 304 33.6
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 2.5e-11 76.3 135 36.3
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 2.1e-10 73.2 307 29.6
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 7.9e-10 71.2 329 30.1
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 1.0e-09 70.9 365 29.0
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 1.8e-09 70.1 59 61.0
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 2.6e-08 66.2 286 29.0
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 1.1e-06 60.8 537 23.6
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 5.3e-06 58.5 289 28.7
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 9.1e-06 57.8 92 32.6


User provided reference genes

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