Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p29650 Brassica napus HOM05D001004 ORTHO05D000653 3.5e-21 104.0 51 100.0
C04p66940 Brassica napus HOM05D001004 ORTHO05D000653 3.5e-21 104.0 51 100.0
BolC4t28195H Brassica oleracea HOM05D001004 ORTHO05D000653 3.5e-21 104.0 51 100.0
CARHR133590 Cardamine hirsuta HOM05D001004 ORTHO05D000653 2.1e-13 78.2 48 77.1
A04p29640 Brassica napus HOM05D001004 ORTHO05D000653 7.8e-13 76.3 48 79.2
BraA04t18430Z Brassica rapa HOM05D001004 ORTHO05D000653 7.8e-13 76.3 48 79.2
BcaC02g07440 Brassica carinata HOM05D001004 ORTHO05D000653 3.0e-12 74.3 48 77.1
C04p66930 Brassica napus HOM05D001004 ORTHO05D000653 3.0e-12 74.3 48 77.1
BolC4t28194H Brassica oleracea HOM05D001004 ORTHO05D000653 3.0e-12 74.3 48 77.1
C03p25690 Brassica napus HOM05D001004 ORTHO05D000653 3.9e-12 73.9 48 75.0
BolC3t14955H Brassica oleracea HOM05D001004 ORTHO05D000653 3.9e-12 73.9 48 75.0
CARHR133600 Cardamine hirsuta HOM05D001004 ORTHO05D000653 5.1e-12 73.6 48 75.0
Sp4g21250 Schrenkiella parvula HOM05D001004 ORTHO05D000653 5.1e-12 73.6 48 77.1
Carub.0004s2090 Capsella rubella HOM05D001004 ORTHO05D000653 1.5e-11 72.0 48 72.9
AT2G38870 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 1.9e-11 71.6 47 74.5
BcaB01g03622 Brassica carinata HOM05D001004 ORTHO05D000653 4.3e-11 70.5 48 70.8
Carub.0004s2089 Capsella rubella HOM05D001004 ORTHO05D000653 4.3e-11 70.5 48 72.9
BraA04t18431Z Brassica rapa HOM05D001004 ORTHO05D000653 5.6e-11 70.1 48 75.0
AL4G36170 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 1.3e-10 68.9 48 70.8
BcaB07g30343 Brassica carinata HOM05D001004 ORTHO05D000653 1.6e-10 68.6 48 72.9
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 2.8e-10 67.8 48 70.8
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 8.1e-10 66.2 48 68.8
BraA04t17113Z Brassica rapa HOM05D001004 ORTHO05D000653 3.1e-09 64.3 50 70.0
AL4G36210 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 1.2e-08 62.4 48 68.8
A04p14760 Brassica napus HOM05D001004 ORTHO05D000653 4.4e-08 60.5 50 68.0
AT2G38900 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 7.6e-08 59.7 48 68.8
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 7.6e-08 59.7 46 56.5
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 7.6e-08 59.7 48 60.4
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 7.6e-08 59.7 48 60.4
Prupe.I000300 Prunus persica HOM05D001004 ORTHO05D000653 9.9e-08 59.3 49 53.1
RcHm_v2.0_Chr4g0390891 Rosa chinensis HOM05D001004 ORTHO05D000653 9.9e-08 59.3 48 58.3
THA.LOC104824172 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 9.9e-08 59.3 48 64.6
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 1.3e-07 58.9 48 58.3
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 1.3e-07 58.9 48 58.3
ClCG07G000750 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.7e-07 58.5 47 63.8
Medtr1g075380 Medicago truncatula HOM05D001004 ORTHO05D000653 2.2e-07 58.2 49 57.1
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 2.9e-07 57.8 47 59.6
Gorai.007G143700 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.9e-07 57.8 46 60.9
Prupe.8G228900 Prunus persica HOM05D001004 ORTHO05D000653 2.9e-07 57.8 46 58.7
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.8e-07 57.4 48 56.2
Gohir.A11G128400 Gossypium hirsutum HOM05D001004 ORTHO05D000653 4.9e-07 57.0 45 60.0
CARHR181290 Cardamine hirsuta HOM05D001004 ORTHO05D000653 1.1e-06 55.8 48 60.4
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 1.1e-06 55.8 48 56.2
Sed0022845 Sechium edule HOM05D001004 ORTHO05D000653 1.1e-06 55.8 50 58.0
Carub.0004s2093 Capsella rubella HOM05D001004 ORTHO05D000653 1.4e-06 55.5 48 62.5
COL.COLO4_38470 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.4e-06 55.5 44 59.1
BcaC02g08941 Brassica carinata HOM05D001004 ORTHO05D000653 1.9e-06 55.1 50 62.0
BolC4t26457H Brassica oleracea HOM05D001004 ORTHO05D000653 1.9e-06 55.1 50 62.0
Dinv44644 Davidia involucrata HOM05D001004 ORTHO05D000653 1.9e-06 55.1 48 56.2
Glyma.20G205900 Glycine max HOM05D001004 ORTHO05D000653 1.9e-06 55.1 49 57.1
HanXRQChr01g0014521 Helianthus annuus HOM05D001004 ORTHO05D000653 1.9e-06 55.1 49 55.1
TPR.G31260 Trifolium pratense HOM05D001004 ORTHO05D000653 1.9e-06 55.1 48 52.1
CSS0031008 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 2.4e-06 54.7 44 59.1
COL.COLO4_38471 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.4e-06 54.7 44 59.1
MD13G1208500 Malus domestica HOM05D001004 ORTHO05D000653 2.4e-06 54.7 49 55.1
Ciclev10022909m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.2e-06 54.3 48 56.2
Migut.D00400 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.2e-06 54.3 48 52.1
Lalb_Chr21g0312271 Lupinus albus HOM05D001004 ORTHO05D000653 3.2e-06 54.3 49 51.0
Manes.05G086318 Manihot esculenta HOM05D001004 ORTHO05D000653 3.2e-06 54.3 48 50.0
Aa31LG5G20810 Aethionema arabicum HOM05D001004 ORTHO05D000653 4.2e-06 53.9 49 65.3
HanXRQChr01g0014571 Helianthus annuus HOM05D001004 ORTHO05D000653 4.2e-06 53.9 44 52.3
HanXRQChr13g0424391 Helianthus annuus HOM05D001004 ORTHO05D000653 4.2e-06 53.9 48 54.2
Potri.006G212200 Populus trichocarpa HOM05D001004 ORTHO05D000653 4.2e-06 53.9 48 52.1
Prupe.1G032500 Prunus persica HOM05D001004 ORTHO05D000653 4.2e-06 53.9 49 53.1
HanXRQChr13g0424431 Helianthus annuus HOM05D001004 ORTHO05D000653 5.4e-06 53.5 48 54.2
Manes.01G200000 Manihot esculenta HOM05D000077 ORTHO05D000552 5.4e-06 53.5 48 56.2
RcHm_v2.0_Chr4g0390951 Rosa chinensis HOM05D001004 ORTHO05D000653 5.4e-06 53.5 48 56.2
CSS0019702 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 7.1e-06 53.1 48 56.2
PSO339G3429 Papaver somniferum HOM05D001004 ORTHO05D000653 7.1e-06 53.1 43 53.5
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 9.3e-06 52.8 49 55.1
Manes.15G037300 Manihot esculenta HOM05D001004 ORTHO05D000653 9.3e-06 52.8 47 53.2
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 9.3e-06 52.8 49 53.1
RcHm_v2.0_Chr4g0390841 Rosa chinensis HOM05D001004 ORTHO05D000653 9.3e-06 52.8 48 54.2


User provided reference genes

Program Settings