Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 2.0e-289 998.4 526 100.0
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 5.4e-250 867.5 496 93.1
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 2.1e-249 865.5 496 93.1
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 6.6e-248 860.5 496 92.5
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 9.9e-244 846.7 495 90.7
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 6.4e-243 844.0 497 91.1
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 6.4e-243 844.0 495 90.7
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 5.1e-240 834.3 495 89.3
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 5.6e-239 830.9 495 89.3
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 2.1e-238 828.9 495 89.7
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 7.6e-236 820.5 495 88.5
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.9e-234 815.8 495 88.1
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.2e-233 813.1 494 88.5
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 3.0e-232 808.5 495 86.7
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 4.8e-230 801.2 495 85.7
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.4e-229 799.7 496 85.5
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 9.9e-220 766.9 495 83.0
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 3.1e-205 718.8 496 77.2
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 1.4e-202 709.9 435 87.6
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 3.7e-190 668.7 493 73.2
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 3.8e-187 658.7 490 71.0
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 6.5e-187 657.9 491 70.9
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.2e-185 653.7 468 72.4
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.6e-185 653.3 498 69.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.6e-185 652.1 501 70.5
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.8e-184 649.8 497 68.8
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.0e-183 646.4 498 71.1
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 2.6e-183 646.0 520 68.3
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.3e-182 643.7 491 71.1
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 2.8e-182 642.5 475 71.4
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 7.0e-181 637.9 497 69.6
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 9.1e-181 637.5 496 70.0
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 1.2e-180 637.1 474 71.5
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 2.0e-180 636.3 502 68.9
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 4.5e-180 635.2 496 69.8
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 5.9e-180 634.8 507 69.4
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.0e-179 634.0 488 69.5
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 1.3e-179 633.6 488 68.4
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.7e-179 633.3 499 68.3
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 2.2e-179 632.9 470 71.5
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 2.9e-179 632.5 495 69.3
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.9e-179 632.5 495 70.5
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 2.9e-179 632.5 520 66.7
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 3.8e-179 632.1 493 69.4
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 3.8e-179 632.1 507 69.2
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 6.5e-179 631.3 496 70.4
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 8.5e-179 630.9 468 72.0
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.1e-178 630.6 499 67.7
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.9e-178 629.8 449 75.1
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 5.5e-178 628.2 485 70.1
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 5.5e-178 628.2 479 70.1
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 7.2e-178 627.9 498 67.7
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 9.4e-178 627.5 470 71.1
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.6e-177 626.7 499 68.9
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.6e-177 626.7 493 69.0
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 2.1e-177 626.3 497 68.4
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 3.6e-177 625.5 474 71.1
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 3.6e-177 625.5 494 69.6
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 4.7e-177 625.2 452 73.2
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 4.7e-177 625.2 492 67.9
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 6.1e-177 624.8 489 68.5
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 6.1e-177 624.8 528 66.3
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 8.0e-177 624.4 470 70.4
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.0e-176 624.0 495 69.3
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.0e-176 624.0 499 68.9
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 4.0e-176 622.1 490 68.8
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 6.7e-176 621.3 492 69.1
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 8.8e-176 620.9 504 67.9
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 8.8e-176 620.9 490 66.7
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 2.6e-175 619.4 497 68.4
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 9.7e-175 617.5 546 63.4
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.3e-174 617.1 470 70.4
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.7e-174 616.7 488 67.4
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 4.8e-174 615.1 468 69.2
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 4.8e-174 615.1 487 68.4
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 6.3e-174 614.8 464 70.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 6.3e-174 614.8 468 70.3
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 6.3e-174 614.8 487 66.9
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 8.2e-174 614.4 462 71.2
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 8.2e-174 614.4 494 68.2
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 9.1e-173 610.9 490 68.2
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 2.6e-172 609.4 487 66.7
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 3.5e-172 609.0 491 67.8
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 2.5e-170 602.8 486 67.5
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.1e-169 599.7 425 75.3
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 8.0e-169 597.8 435 73.1
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 4.4e-167 592.0 505 64.8
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 1.3e-166 590.5 471 68.6
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 6.3e-166 588.2 482 65.8
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 8.3e-166 587.8 485 65.8
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.3e-163 580.5 487 66.1
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 2.5e-162 576.2 510 62.4
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.8e-160 570.1 464 67.0
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 6.8e-160 568.2 422 73.7
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 5.7e-159 565.1 475 64.2
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 9.8e-159 564.3 398 75.1
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.3e-158 563.9 449 67.3
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 2.7e-156 556.2 575 57.0
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.5e-156 555.4 422 72.5
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.0e-155 552.0 440 68.9
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 2.7e-148 529.6 472 62.3
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.0e-147 527.7 411 66.9
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 4.3e-146 522.3 435 65.7
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.2e-145 520.8 449 62.8
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.6e-145 520.4 410 70.0
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.8e-128 463.8 339 73.5
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 5.2e-128 462.2 477 54.9
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 6.4e-126 455.3 436 61.9
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 9.2e-125 451.4 386 62.4
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.6e-121 439.5 537 51.2
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 3.4e-119 433.0 355 63.7
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 7.1e-117 425.2 456 54.8
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 1.7e-115 420.6 460 53.7
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 6.9e-112 408.7 317 70.3
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 5.3e-96 355.9 414 52.2
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.5e-95 354.4 251 74.5
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.8e-73 280.4 231 66.7
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.3e-73 279.3 228 67.1
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 8.2e-73 278.9 235 65.5
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.5e-69 266.2 221 65.6
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.1e-68 262.7 213 66.7
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 5.5e-61 239.6 244 54.5
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.0e-54 218.8 182 66.5
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.1e-53 215.3 481 34.7
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 2.1e-52 211.1 173 63.6
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.5e-39 167.2 148 58.1
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.0e-38 163.3 142 64.8
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.5e-37 161.8 137 65.7
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.5e-34 151.8 139 67.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 7.0e-32 142.9 131 65.6
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-31 142.1 131 65.6
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-31 142.1 131 65.6
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.2e-31 142.1 131 65.6
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.6e-31 141.7 131 65.6
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 2.0e-31 141.4 131 64.9
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 1.5e-29 135.2 137 62.8
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.5e-29 134.4 133 63.2
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 7.3e-29 132.9 158 53.2
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 2.3e-27 127.9 290 33.8
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 3.1e-27 127.5 129 55.8
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.1e-27 127.5 103 65.0
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.1e-24 119.0 130 55.4
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 1.4e-24 118.6 290 32.1
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 2.8e-20 104.4 127 51.2
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 3.6e-20 104.0 125 55.2
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 6.2e-20 103.2 131 52.7
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 6.2e-20 103.2 111 59.5
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.1e-19 102.4 100 58.0
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.3e-19 101.3 121 52.1
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 4.0e-19 100.5 108 61.1
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 2.0e-18 98.2 88 62.5
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 5.8e-18 96.7 72 76.4
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 8.3e-17 92.8 84 58.3
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 1.1e-11 75.9 103 49.5
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.8e-11 75.1 46 69.6
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.8e-11 75.1 46 69.6
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.5e-10 72.0 75 54.7
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.5e-10 72.0 165 34.5
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 2.6e-10 71.2 49 81.6
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.6e-10 71.2 71 52.1
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.4e-10 70.9 93 44.1
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 9.9e-10 69.3 75 58.7
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 9.9e-10 69.3 177 31.6
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 4.9e-09 67.0 108 44.4
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 6.4e-09 66.6 90 51.1
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 7.1e-08 63.2 46 76.1
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 2.1e-07 61.6 48 70.8
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 3.0e-06 57.8 81 40.7


User provided reference genes

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