Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 1.5e-88 329.7 190 100.0
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 1.5e-88 329.7 190 100.0
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 1.1e-75 287.0 170 100.0
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 4.1e-75 285.0 190 90.0
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 7.1e-67 257.7 190 83.7
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 2.6e-61 239.2 189 79.4
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 2.1e-58 229.6 190 77.9
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 9.0e-54 214.2 189 73.5
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 1.7e-52 209.9 192 72.9
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 6.2e-47 191.4 172 76.7
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 1.2e-45 187.2 190 66.3
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 2.5e-40 169.5 191 62.8
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 3.4e-37 159.1 195 61.0
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.3e-36 157.1 195 60.5
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.3e-33 147.1 192 58.3
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 2.3e-33 146.4 162 64.2
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 5.3e-30 135.2 190 52.6
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 8.4e-28 127.9 189 51.3
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 1.4e-27 127.1 161 59.6
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 3.1e-22 109.4 71 87.3
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.3e-20 104.0 119 59.7
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.2e-18 97.4 181 46.4
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 7.4e-16 88.2 105 57.1
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 7.4e-16 88.2 122 52.5
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.3e-15 87.4 105 57.1
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.7e-15 87.0 186 41.9
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 2.4e-14 83.2 94 60.6
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 3.1e-14 82.8 98 57.1
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 6.9e-14 81.6 147 47.6
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 6.9e-14 81.6 175 42.9
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 9.1e-14 81.3 77 61.0
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 1.5e-13 80.5 171 46.2
BcaB01g03781 Brassica carinata HOM05D004973 ORTHO05D006119 2.6e-13 79.7 65 69.2
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 4.5e-13 79.0 129 47.3
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 5.9e-13 78.6 117 48.7
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.0e-12 77.8 113 48.7
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 1.0e-12 77.8 177 42.9
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.3e-12 77.4 172 41.3
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 2.9e-12 76.3 111 51.4
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.9e-12 76.3 66 65.2
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 3.8e-12 75.9 102 51.0
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.8e-12 75.9 83 56.6
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.8e-12 75.9 162 41.4
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.0e-12 75.5 160 44.4
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 6.5e-12 75.1 109 51.4
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 6.5e-12 75.1 87 52.9
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 6.5e-12 75.1 176 41.5
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.5e-12 75.1 188 39.4
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 6.5e-12 75.1 76 60.5
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 8.5e-12 74.7 172 41.3
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 8.5e-12 74.7 154 38.3
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.1e-11 74.3 171 39.8
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.4e-11 73.9 76 59.2
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.4e-11 73.9 75 60.0
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.9e-11 73.6 125 43.2
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.9e-11 73.6 177 38.4
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.5e-11 73.2 177 40.1
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 2.5e-11 73.2 175 40.6
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 2.5e-11 73.2 167 40.7
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 2.5e-11 73.2 103 52.4
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 2.5e-11 73.2 111 47.7
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 3.2e-11 72.8 113 48.7
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 4.2e-11 72.4 148 43.2
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 4.2e-11 72.4 89 50.6
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 5.5e-11 72.0 156 42.9
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.5e-11 72.0 170 40.6
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 5.5e-11 72.0 92 55.4
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 7.2e-11 71.6 153 39.9
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 7.2e-11 71.6 166 41.6
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 7.2e-11 71.6 168 40.5
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 1.2e-10 70.9 180 39.4
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 2.7e-10 69.7 164 40.2
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 2.7e-10 69.7 147 41.5
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 2.7e-10 69.7 168 39.3
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 3.6e-10 69.3 122 45.1
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 3.6e-10 69.3 90 55.6
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 3.6e-10 69.3 164 37.2
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 6.1e-10 68.6 106 45.3
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 7.9e-10 68.2 166 36.7
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 7.9e-10 68.2 175 37.7
BcaB02g09290 Brassica carinata HOM05D004973 ORTHO05D006119 1.0e-09 67.8 161 40.4
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.0e-09 67.8 163 41.1
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.0e-09 67.8 139 46.0
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.0e-09 67.8 134 43.3
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.0e-09 67.8 182 37.9
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.0e-09 67.8 166 42.2
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.0e-09 67.8 131 42.7
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.4e-09 67.4 128 43.8
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.8e-09 67.0 193 36.8
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.8e-09 67.0 123 47.2
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 2.3e-09 66.6 97 51.5
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 2.3e-09 66.6 175 39.4
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.9e-09 65.9 176 39.2
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 5.1e-09 65.5 130 43.8
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 5.1e-09 65.5 158 37.3
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 5.1e-09 65.5 75 50.7
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 6.7e-09 65.1 118 40.7
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 6.7e-09 65.1 105 45.7
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 8.8e-09 64.7 173 39.3
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.5e-08 63.9 82 46.3
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.5e-08 63.9 111 45.0
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 2.6e-08 63.2 177 37.9
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.3e-08 62.8 166 39.2
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 3.3e-08 62.8 158 39.9
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 4.4e-08 62.4 148 39.9
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 5.7e-08 62.0 97 50.5
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 5.7e-08 62.0 165 37.0
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 7.4e-08 61.6 173 38.7
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 7.4e-08 61.6 169 38.5
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 7.4e-08 61.6 163 36.2
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 9.7e-08 61.2 172 32.6
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 1.3e-07 60.8 179 37.4
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 2.2e-07 60.1 174 36.8
Aa31LG5G22620 Aethionema arabicum HOM05D004973 ORTHO05D006119 2.8e-07 59.7 170 37.1
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 2.8e-07 59.7 55 58.2
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 2.8e-07 59.7 147 39.5
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 3.7e-07 59.3 135 38.5
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.1e-06 57.8 166 36.7
BolC4t22663H Brassica oleracea HOM05D004973 ORTHO05D006119 2.4e-06 56.6 86 55.8
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.4e-06 56.6 188 31.9


User provided reference genes

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