Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p65610 Brassica napus HOM05D002801 ORTHO05D003002 5.0e-168 594.3 296 100.0
BraA04t18309Z Brassica rapa HOM05D002801 ORTHO05D003002 1.6e-158 562.8 302 94.7
BcaB01g03805 Brassica carinata HOM05D002801 ORTHO05D003002 1.0e-67 261.2 222 64.4
Sp4g19240 Schrenkiella parvula HOM05D002801 ORTHO05D003002 2.9e-67 259.6 240 62.5
Thhalv10016298m.g Eutrema salsugineum HOM05D002801 ORTHO05D003002 5.5e-66 255.4 241 60.6
CARHR131420 Cardamine hirsuta HOM05D002801 ORTHO05D003002 3.5e-65 252.7 240 59.6
BcaB02g09317 Brassica carinata HOM05D002801 ORTHO05D003002 6.7e-64 248.4 223 61.4
AL4G33200 Arabidopsis lyrata HOM05D002801 ORTHO05D003002 1.5e-63 247.3 217 63.6
BolC4t22748H Brassica oleracea HOM05D002801 ORTHO05D003002 2.5e-63 246.5 241 59.8
Carub.0004s1880 Capsella rubella HOM05D002801 ORTHO05D003002 4.3e-63 245.7 213 64.3
A05p08890 Brassica napus HOM05D002801 ORTHO05D003002 5.7e-63 245.4 241 59.3
BraA05t19854Z Brassica rapa HOM05D002801 ORTHO05D003002 5.7e-63 245.4 241 59.3
BcaC02g11818 Brassica carinata HOM05D002801 ORTHO05D003002 9.6e-63 244.6 241 59.3
C04p11020 Brassica napus HOM05D002801 ORTHO05D003002 9.6e-63 244.6 241 59.3
AT2G36960 Arabidopsis thaliana HOM05D002801 ORTHO05D003002 1.4e-61 240.7 213 62.4
Aa31LG5G22170 Aethionema arabicum HOM05D002801 ORTHO05D003002 1.3e-59 234.2 246 56.1
THA.LOC104806477 Tarenaya hassleriana HOM05D002801 ORTHO05D003002 1.9e-55 220.3 240 53.3
Duzib093G0446 Durio zibethinus HOM05D002801 ORTHO05D003002 8.2e-46 188.3 192 52.6
Cpa.g.sc56.26 Carica papaya HOM05D002801 ORTHO05D003002 2.4e-45 186.8 180 53.9
Gohir.A04G072200 Gossypium hirsutum HOM05D002801 ORTHO05D003002 2.0e-44 183.7 181 53.6
Gohir.D04G110700 Gossypium hirsutum HOM05D002801 ORTHO05D003002 2.0e-44 183.7 181 53.6
Gorai.009G414900 Gossypium raimondii HOM05D002801 ORTHO05D003002 2.0e-44 183.7 181 53.6
Thecc.05G064900 Theobroma cacao HOM05D002801 ORTHO05D003002 2.6e-44 183.3 181 53.6
Prupe.6G232900 Prunus persica HOM05D002801 ORTHO05D003002 3.4e-44 183.0 180 53.3
Ca_22518_v3 Cicer arietinum L. HOM05D002801 ORTHO05D003002 1.7e-43 180.6 227 48.5
QL07p043643 Quercus lobata HOM05D002801 ORTHO05D003002 1.7e-43 180.6 181 53.0
MD12G1113900 Malus domestica HOM05D002801 ORTHO05D003002 2.2e-43 180.3 180 52.8
Atru.chr8.1823 Acer truncatum HOM05D002801 ORTHO05D003002 1.1e-42 177.9 181 51.4
Glyma.16G128300 Glycine max HOM05D002801 ORTHO05D003002 1.1e-42 177.9 182 53.3
TWI53G0691 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 1.1e-42 177.9 180 52.8
Glyma.02G048100 Glycine max HOM05D002801 ORTHO05D003002 1.9e-42 177.2 182 53.3
Phvul.003G261500 Phaseolus vulgaris HOM05D002801 ORTHO05D003002 1.9e-42 177.2 182 53.3
Potri.006G125400 Populus trichocarpa HOM05D002801 ORTHO05D003002 1.9e-42 177.2 230 45.7
Medtr8g069965 Medicago truncatula HOM05D002801 ORTHO05D003002 4.2e-42 176.0 227 48.0
TAR636G1313 Trochodendron aralioides HOM05D002801 ORTHO05D003002 4.2e-42 176.0 191 51.3
Eucgr.A01690 Eucalyptus grandis HOM05D002801 ORTHO05D003002 5.5e-42 175.6 226 46.9
Psat4g113080 Pisum sativum HOM05D002801 ORTHO05D003002 7.2e-42 175.3 227 48.5
VMungo0251G2590 Vigna mungo HOM05D002801 ORTHO05D003002 7.2e-42 175.3 182 52.7
RcHm_v2.0_Chr3g0470121 Rosa chinensis HOM05D002801 ORTHO05D003002 9.4e-42 174.9 180 52.2
CiPaw.10G130400 Carya illinoinensis HOM05D002801 ORTHO05D003002 1.2e-41 174.5 225 46.7
GSVIVG01025725001 Vitis vinifera HOM05D002801 ORTHO05D003002 1.2e-41 174.5 181 53.6
TPR.G24800 Trifolium pratense HOM05D002801 ORTHO05D003002 1.6e-41 174.1 227 47.6
TWI74G0434 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 2.1e-41 173.7 180 51.7
Ciclev10011099m.g Citrus clementina HOM05D002801 ORTHO05D003002 2.7e-41 173.3 182 50.0
TAR633G0396 Trochodendron aralioides HOM05D002801 ORTHO05D003002 6.1e-41 172.2 184 51.6
Actinidia08779 Actinidia chinensis HOM05D002801 ORTHO05D003002 7.9e-41 171.8 188 51.6
CiPaw.10G130300 Carya illinoinensis HOM05D002801 ORTHO05D003002 1.0e-40 171.4 183 50.8
FAN05G5473 Fragaria x ananassa HOM05D002801 ORTHO05D003002 1.8e-40 170.6 180 50.6
MELO3C009350.2 Cucumis melo HOM05D002801 ORTHO05D003002 2.3e-40 170.2 181 49.7
PGR004G0677 Punica granatum HOM05D002801 ORTHO05D003002 3.0e-40 169.9 184 53.8
Sed0017434 Sechium edule HOM05D002801 ORTHO05D003002 3.0e-40 169.9 181 49.7
Dinv35783 Davidia involucrata HOM05D002801 ORTHO05D003002 3.9e-40 169.5 197 48.7
FAN09G1888 Fragaria x ananassa HOM05D002801 ORTHO05D003002 3.9e-40 169.5 180 50.6
CsaV3_3G035910 Cucumis sativus L. HOM05D002801 ORTHO05D003002 5.2e-40 169.1 181 49.2
Lalb_Chr09g0333141 Lupinus albus HOM05D002801 ORTHO05D003002 6.7e-40 168.7 180 51.1
Manes.09G067140 Manihot esculenta HOM05D002801 ORTHO05D003002 8.8e-40 168.3 209 45.5
Potri.016G091700 Populus trichocarpa HOM05D002801 ORTHO05D003002 8.8e-40 168.3 230 43.9
Manes.08G009700 Manihot esculenta HOM05D002801 ORTHO05D003002 1.5e-39 167.5 190 49.5
MSTRG.26694 Avicennia marina HOM05D002801 ORTHO05D003002 2.0e-39 167.2 192 50.5
FvH4_6g16260 Fragaria vesca HOM05D002801 ORTHO05D003002 7.4e-39 165.2 173 51.4
FAN14G2570 Fragaria x ananassa HOM05D002801 ORTHO05D003002 7.4e-39 165.2 173 51.4
EL10Ac7g16619 Beta vulgaris HOM05D002801 ORTHO05D003002 9.7e-39 164.9 188 50.5
CANSAT80G2908 Cannabis sativa HOM05D002801 ORTHO05D003002 9.7e-39 164.9 180 50.0
ClCG10G020190 Citrullus lanatus HOM05D002801 ORTHO05D003002 1.3e-38 164.5 182 48.9
FAN02G3555 Fragaria x ananassa HOM05D002801 ORTHO05D003002 1.3e-38 164.5 180 49.4
arahy.Tifrunner.gnm1.ann1.IM29MK Arachis hypogaea HOM05D002801 ORTHO05D003002 2.2e-38 163.7 182 48.9
arahy.Tifrunner.gnm1.ann1.KV6AVL Arachis hypogaea HOM05D002801 ORTHO05D003002 2.2e-38 163.7 182 48.9
Lj4g0021696 Lotus japonicus HOM05D002801 ORTHO05D003002 2.2e-38 163.7 182 50.5
Lalb_Chr16g0391251 Lupinus albus HOM05D002801 ORTHO05D003002 2.2e-38 163.7 182 51.6
Sed0003779 Sechium edule HOM05D002801 ORTHO05D003002 4.8e-38 162.5 181 48.6
Hma1.2p1_0205F.1_g087110 Hydrangea macrophylla HOM05D002801 ORTHO05D003002 8.2e-38 161.8 172 53.5
Cfa017598 Carpinus fangiana HOM05D002801 ORTHO05D003002 1.1e-37 161.4 181 50.3
Haze_20554 Corylus avellana HOM05D002801 ORTHO05D003002 1.4e-37 161.0 181 50.3
Peaxi162Scf00701g00031 Petunia axillaris HOM05D002801 ORTHO05D003002 1.4e-37 161.0 182 50.5
Sc02g0001680 Simmondsia chinensis HOM05D002801 ORTHO05D003002 1.4e-37 161.0 198 47.0
Sabra16G0097400 Salix brachista HOM05D002801 ORTHO05D009785 5.3e-37 159.1 306 36.9
Nn2g11575 Nelumbo nucifera HOM05D002801 ORTHO05D003002 9.1e-37 158.3 171 51.5
Solyc09g008100.4 Solanum lycopersicum HOM05D002801 ORTHO05D003002 9.1e-37 158.3 197 47.2
Aqoxy1G00134 Aquilegia oxysepala HOM05D002801 ORTHO05D003002 1.2e-36 157.9 205 45.4
Dinv37307 Davidia involucrata HOM05D002801 ORTHO05D003002 1.2e-36 157.9 200 46.0
Sopen09g002910 Solanum pennellii HOM05D002801 ORTHO05D003002 2.0e-36 157.1 197 46.7
SalBow5G1472 Salvia bowleyana HOM05D002801 ORTHO05D003002 2.6e-36 156.8 194 47.9
SalBow5G4156 Salvia bowleyana HOM05D002801 ORTHO05D003002 3.5e-36 156.4 186 48.4
CAN.G900.43 Capsicum annuum HOM05D002801 ORTHO05D003002 1.3e-35 154.5 182 47.8
Rhsim03G0092600 Rhododendron simsii HOM05D002801 ORTHO05D003002 1.3e-35 154.5 197 46.2
Sabra06G0099000 Salix brachista HOM05D002801 ORTHO05D003002 2.9e-35 153.3 273 38.1
vmacro07286 Vaccinium macrocarpon HOM05D002801 ORTHO05D003002 6.5e-35 152.1 197 46.7
Lj2A116G73 Lonicera japonica HOM05D002801 ORTHO05D003002 8.5e-35 151.8 188 47.3
Gohir.A01G214500 Gossypium hirsutum HOM05D002801 ORTHO05D003002 1.1e-34 151.4 181 48.1
Gohir.D01G203000 Gossypium hirsutum HOM05D002801 ORTHO05D003002 1.1e-34 151.4 181 48.1
PSO339G6183 Papaver somniferum HOM05D002801 ORTHO05D003002 1.5e-34 151.0 183 48.1
PSO801G0542 Papaver somniferum HOM05D002801 ORTHO05D003002 7.2e-34 148.7 183 47.0
Duzib128G1402 Durio zibethinus HOM05D002801 ORTHO05D003002 1.2e-33 147.9 149 53.7
Nitab4.5_0002632g0070 Nicotiana tabacum HOM05D002801 ORTHO05D003002 1.2e-33 147.9 209 44.5
MBI11_g28438_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 2.7e-33 146.7 172 47.1
ECA238G4143 Erigeron canadensis HOM05D002801 ORTHO05D003002 4.7e-33 146.0 216 43.1
HanXRQChr02g0053371 Helianthus annuus HOM05D002801 ORTHO05D003002 4.7e-33 146.0 173 51.4
Cc04_g12180 Coffea canephora HOM05D002801 ORTHO05D003002 1.0e-32 144.8 172 48.3
Oeu040375.1 Olea europaea HOM05D002801 ORTHO05D003002 1.0e-32 144.8 180 47.8
CDE02G0847 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 8.8e-32 141.7 171 46.8
SGA_v2.0_scaffold35G14132 Striga asiatica HOM05D002801 ORTHO05D003002 8.8e-32 141.7 206 44.2
CDE06G1853 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 3.3e-31 139.8 172 47.1
BolC4t28051H Brassica oleracea HOM05D002801 ORTHO05D003002 5.7e-31 139.0 279 38.4
HanXRQChr01g0027631 Helianthus annuus HOM05D002801 ORTHO05D003002 7.5e-31 138.7 132 58.3
DCAR_017687 Daucus carota HOM05D002801 ORTHO05D003002 8.2e-30 135.2 144 53.5
MBI19_g35569_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 1.1e-29 134.8 172 45.9
Migut.L01697 Erythranthe guttata HOM05D002801 ORTHO05D003002 3.1e-29 133.3 179 46.9
HPP92_012371 Vanilla planifolia HOM05D002801 ORTHO05D003002 7.7e-28 128.6 170 45.3
Zm00001eb399030 Zea mays HOM05D002801 ORTHO05D003002 1.7e-27 127.5 162 50.0
Lsat_1_v5_gn_6_11100 Lactuca sativa HOM05D002801 ORTHO05D003002 2.2e-27 127.1 124 58.1
ECA248G2038 Erigeron canadensis HOM05D002801 ORTHO05D003002 5.0e-27 125.9 132 53.8
A04p28250 Brassica napus HOM05D002801 ORTHO05D003002 3.2e-26 123.2 70 84.3
Os03g0241100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 1.2e-25 121.3 169 45.0
Ah.15g092490 Amaranthus hybridus HOM05D002801 ORTHO05D003002 4.7e-25 119.4 103 56.3
Nitab4.5_0003861g0040 Nicotiana tabacum HOM05D002801 ORTHO05D003002 2.3e-24 117.1 157 46.5
CSS0021053 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 6.8e-24 115.5 106 54.7
Mapoly0009s0010 Marchantia polymorpha HOM05D002801 ORTHO05D003002 2.0e-23 114.0 140 48.6
Nn2g13773 Nelumbo nucifera HOM05D002801 ORTHO05D003002 3.7e-22 109.8 154 42.2
Os03g0773100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 3.7e-22 109.8 148 45.3
SHI12444 Sapria himalayana HOM05D002801 ORTHO05D003002 8.3e-22 108.6 223 37.7
SMO116G0270 Selaginella moellendorffii HOM05D002801 ORTHO05D003002 1.4e-21 107.8 152 42.8
CBR_g26407 Chara braunii HOM05D002801 ORTHO05D003002 1.3e-19 101.3 119 48.7
ATR0115G018 Amborella trichopoda HOM05D002801 ORTHO05D003002 8.0e-17 92.0 145 42.8
HanXRQChr17g0568771 Helianthus annuus HOM05D002801 ORTHO05D003002 1.1e-13 81.6 96 51.0
Zm00001eb058920 Zea mays HOM05D002801 ORTHO05D003002 1.2e-12 78.2 134 42.5
AUR62026908 Chenopodium quinoa HOM05D002801 ORTHO05D003002 7.3e-10 68.9 165 34.5
CSS0037052 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 9.5e-10 68.6 46 76.1
Zm00001eb010280 Zea mays HOM05D002801 ORTHO05D003002 4.7e-09 66.2 59 62.7
AUR62044138 Chenopodium quinoa HOM05D002801 ORTHO05D003002 1.8e-08 64.3 111 38.7
BcaC02g07566 Brassica carinata HOM05D002801 ORTHO05D003002 2.3e-08 63.9 54 66.7
Gorai.002G247700 Gossypium raimondii HOM05D002801 ORTHO05D003002 2.6e-07 60.5 58 53.4
COL.COLO4_10010 Corchorus olitorius HOM05D002801 ORTHO05D003002 2.2e-06 57.4 58 51.7


User provided reference genes

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