Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 1.4e-77 294.3 399 100.0
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 1.6e-76 290.8 399 99.5
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 1.1e-74 284.6 399 97.7
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 4.8e-73 279.3 399 94.0
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 6.9e-72 275.4 399 94.0
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 7.1e-69 265.4 399 95.7
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 5.1e-51 206.1 399 68.2
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.4e-48 197.2 451 71.2
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 3.2e-45 186.8 450 73.1
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.8e-43 181.0 397 75.1
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 1.1e-42 178.3 429 69.9
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 1.3e-41 174.9 104 88.5
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 1.3e-38 164.9 446 70.4
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 6.5e-38 162.5 450 70.0
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 2.3e-35 154.1 388 75.0
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 3.9e-35 153.3 388 75.3
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 4.1e-32 143.3 109 74.3
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 3.0e-19 100.5 108 59.3
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 4.0e-19 100.1 112 51.8
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 1.2e-18 98.6 119 56.3
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 2.0e-18 97.8 108 58.3
C04p11500 Brassica napus HOM05D006485 ORTHO05D006108 2.0e-18 97.8 61 82.0
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 5.7e-18 96.3 109 56.9
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 5.7e-18 96.3 109 56.9
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 7.5e-18 95.9 101 61.4
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 1.3e-17 95.1 108 60.2
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 1.7e-17 94.7 107 57.0
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 2.2e-17 94.4 122 54.9
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 3.7e-17 93.6 104 55.8
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 1.1e-16 92.0 109 55.0
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.4e-16 91.7 100 59.0
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.4e-16 91.7 115 50.4
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.1e-16 90.1 115 50.4
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.1e-16 90.1 115 50.4
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 9.1e-16 89.0 115 50.4
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 9.1e-16 89.0 115 50.4
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 4.5e-15 86.7 122 50.0
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 1.0e-14 85.5 119 50.4
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.0e-14 85.5 115 48.7
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 1.7e-14 84.7 125 48.8
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.5e-14 82.4 93 52.7
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 2.5e-13 80.9 113 47.8
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 2.5e-13 80.9 85 54.1
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 4.2e-13 80.1 97 47.4
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 7.2e-13 79.3 98 51.0
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 7.2e-13 79.3 142 42.3
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 1.6e-12 78.2 142 40.8
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 2.7e-12 77.4 96 47.9
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 4.7e-12 76.6 88 50.0
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 6.1e-12 76.3 92 48.9
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 6.1e-12 76.3 142 41.5
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 6.1e-12 76.3 111 43.2
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 8.0e-12 75.9 92 48.9
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 1.4e-11 75.1 90 44.4
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 2.3e-11 74.3 92 48.9
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 2.3e-11 74.3 112 42.0
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 8.8e-11 72.4 97 45.4
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 8.8e-11 72.4 102 44.1
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.5e-10 71.6 92 47.8
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.4e-10 70.5 131 40.5
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.4e-10 70.5 101 44.6
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 4.4e-10 70.1 101 41.6
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 7.5e-10 69.3 76 48.7
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 9.8e-10 68.9 82 48.8
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 1.3e-09 68.6 126 38.1
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 2.2e-09 67.8 110 39.1
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 2.2e-09 67.8 91 48.4
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 6.3e-09 66.2 96 44.8
Nn6g35112 Nelumbo nucifera HOM05D006485 ORTHO05D006108 6.3e-09 66.2 119 39.5
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 6.3e-09 66.2 70 50.0
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 8.3e-09 65.9 95 45.3
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 8.3e-09 65.9 95 44.2
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 8.3e-09 65.9 74 48.6
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 1.4e-08 65.1 96 40.6
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.8e-08 64.7 90 44.4
Lsat_1_v5_gn_2_23681 Lactuca sativa HOM05D006485 ORTHO05D006108 2.4e-08 64.3 72 47.2
SHI27750 Sapria himalayana HOM05D006485 ORTHO05D006108 3.1e-08 63.9 102 44.1
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 4.1e-08 63.5 85 48.2
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 4.1e-08 63.5 87 47.1
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 5.4e-08 63.2 93 41.9
FAN10G0942 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.4e-08 63.2 89 44.9
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 5.4e-08 63.2 80 47.5
Glyma.10G064400 Glycine max HOM05D013674 ORTHO05D006108 7.0e-08 62.8 139 35.3
FAN21G0234 Fragaria x ananassa HOM05D006485 ORTHO05D006108 9.2e-08 62.4 89 44.9
FAN11G0041 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.2e-07 62.0 113 38.9
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 1.6e-07 61.6 143 34.3
FAN03G0002 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.6e-07 61.6 68 52.9
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.6e-07 61.6 46 67.4
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 2.0e-07 61.2 110 38.2
FAN11G0239 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.7e-07 60.8 68 51.5
FAN13G1461 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.7e-07 60.8 68 52.9
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 3.5e-07 60.5 115 33.9
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 3.5e-07 60.5 117 40.2
ECA238G0083 Erigeron canadensis HOM05D006485 ORTHO05D006108 5.9e-07 59.7 97 41.2
FAN27G2855 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.9e-07 59.7 107 39.3
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 5.9e-07 59.7 82 45.1
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 7.7e-07 59.3 82 43.9
SGA_v2.0_scaffold118G32589 Striga asiatica HOM05D011389 ORTHO05D006108 1.0e-06 58.9 50 56.0
Ah.08g211120 Amaranthus hybridus HOM05D006485 ORTHO05D006108 1.3e-06 58.5 107 34.6
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 1.7e-06 58.2 138 34.8
FAN21G1428 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.7e-06 58.2 68 50.0
arahy.Tifrunner.gnm1.ann1.I5PMLK Arachis hypogaea HOM05D036014 ORTHO05D006108 2.9e-06 57.4 122 36.9
arahy.Tifrunner.gnm1.ann1.MVX6TJ Arachis hypogaea HOM05D036014 ORTHO05D006108 2.9e-06 57.4 122 36.9
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 2.9e-06 57.4 76 44.7
Lsat_1_v5_gn_6_29041 Lactuca sativa HOM05D006485 ORTHO05D006108 3.8e-06 57.0 88 39.8
Nitab4.5_0011622g0020 Nicotiana tabacum HOM05D011389 ORTHO05D006108 3.8e-06 57.0 53 60.4
Solyc09g008770.3 Solanum lycopersicum HOM05D006485 ORTHO05D006108 3.8e-06 57.0 137 33.6
Sopen11g019160 Solanum pennellii HOM05D011389 ORTHO05D006108 3.8e-06 57.0 40 70.0
arahy.Tifrunner.gnm1.ann1.DLQI02 Arachis hypogaea HOM05D013121 ORTHO05D015407 6.6e-06 56.2 109 34.9
Migut.C01359 Erythranthe guttata HOM05D011389 ORTHO05D006108 8.6e-06 55.8 50 54.0
Lj1g0021486 Lotus japonicus HOM05D013121 ORTHO05D015407 8.6e-06 55.8 146 35.6
SGA_v2.0_scaffold277G46722 Striga asiatica HOM05D006485 ORTHO05D006108 8.6e-06 55.8 80 50.0


User provided reference genes

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