Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p65440 Brassica napus HOM05D000874 ORTHO05D001049 3.8e-30 134.0 62 100.0
A04p28040 Brassica napus HOM05D000874 ORTHO05D001049 9.5e-21 102.8 47 95.7
BcaC02g07585 Brassica carinata HOM05D000874 ORTHO05D001049 2.8e-20 101.3 47 93.6
BolC4t28033H Brassica oleracea HOM05D000874 ORTHO05D001049 2.8e-20 101.3 47 93.6
BraA04t18291Z Brassica rapa HOM05D000874 ORTHO05D001049 1.0e-19 99.4 47 91.5
AT2G36540 Arabidopsis thaliana HOM05D000874 ORTHO05D001049 4.1e-16 87.4 47 78.7
Carub.0004s1835 Capsella rubella HOM05D000874 ORTHO05D001049 9.2e-16 86.3 47 76.6
AL4G32720 Arabidopsis lyrata HOM05D000874 ORTHO05D001049 1.6e-15 85.5 47 74.5
Sp4g18840 Schrenkiella parvula HOM05D000874 ORTHO05D001049 2.7e-15 84.7 47 76.6
CARHR130830 Cardamine hirsuta HOM05D000874 ORTHO05D001049 3.5e-15 84.3 47 74.5
Thhalv10027102m.g Eutrema salsugineum HOM05D000874 ORTHO05D001049 3.5e-15 84.3 47 72.3
BcaC02g11772 Brassica carinata HOM05D000874 ORTHO05D001049 1.9e-13 78.6 47 72.3
C04p11560 Brassica napus HOM05D000874 ORTHO05D001049 1.9e-13 78.6 47 72.3
BolC4t22804H Brassica oleracea HOM05D000874 ORTHO05D001049 1.9e-13 78.6 47 72.3
A05p09260 Brassica napus HOM05D000183 ORTHO05D000100 2.5e-13 78.2 47 70.2
BraA05t19883Z Brassica rapa HOM05D000874 ORTHO05D001049 2.5e-13 78.2 47 70.2
Carub.0004s1834 Capsella rubella HOM05D000874 ORTHO05D001049 2.5e-13 78.2 47 72.3
BcaB02g09347 Brassica carinata HOM05D000874 ORTHO05D001049 3.3e-13 77.8 47 70.2
Sp4g18830 Schrenkiella parvula HOM05D000874 ORTHO05D001049 4.3e-13 77.4 49 65.3
Aa31LG5G21760 Aethionema arabicum HOM05D000874 ORTHO05D001049 8.9e-11 69.7 49 59.2
FAN02G0261 Fragaria x ananassa HOM05D000874 ORTHO05D001049 1.9e-08 62.0 47 55.3
FvH4_6g17650 Fragaria vesca HOM05D000874 ORTHO05D001049 4.1e-08 60.8 47 55.3
FAN05G3328 Fragaria x ananassa HOM05D000874 ORTHO05D001049 9.2e-08 59.7 47 53.2
FAN05G3737 Fragaria x ananassa HOM05D000874 ORTHO05D001049 9.2e-08 59.7 47 53.2
MD14G1014000 Malus domestica HOM05D000874 ORTHO05D001049 9.2e-08 59.7 47 53.2
Ciclev10013817m.g Citrus clementina HOM05D000874 ORTHO05D001049 1.2e-07 59.3 47 53.2
FvH4_6g18040 Fragaria vesca HOM05D000874 ORTHO05D001049 1.2e-07 59.3 47 57.4
MD14G1014100 Malus domestica HOM05D000874 ORTHO05D001049 1.2e-07 59.3 47 53.2
RcHm_v2.0_Chr4g0442541 Rosa chinensis HOM05D000874 ORTHO05D001049 1.2e-07 59.3 47 53.2
AUR62033596 Chenopodium quinoa HOM05D000874 ORTHO05D001049 1.6e-07 58.9 47 53.2
FAN09G3505 Fragaria x ananassa HOM05D000874 ORTHO05D001049 2.7e-07 58.2 47 51.1
RcHm_v2.0_Chr3g0472301 Rosa chinensis HOM05D000874 ORTHO05D001049 3.5e-07 57.8 47 55.3
THA.LOC104823468 Tarenaya hassleriana HOM05D000874 ORTHO05D001049 4.6e-07 57.4 49 51.0
EL10Ac7g17013 Beta vulgaris HOM05D000874 ORTHO05D001049 6.0e-07 57.0 47 53.2
Potri.010G244200 Populus trichocarpa HOM05D000874 ORTHO05D001049 6.0e-07 57.0 45 55.6
VMungo1383G3000 Vigna mungo HOM05D000874 ORTHO05D001049 6.0e-07 57.0 47 51.1
ECA248G2582 Erigeron canadensis HOM05D000874 ORTHO05D001049 7.8e-07 56.6 47 51.1
MD14G1013900 Malus domestica HOM05D000874 ORTHO05D001049 7.8e-07 56.6 47 51.1
THA.LOC104823469 Tarenaya hassleriana HOM05D000874 ORTHO05D001049 7.8e-07 56.6 47 51.1
TWI53G0240 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 7.8e-07 56.6 45 53.3
FvH4_6g17690 Fragaria vesca HOM05D000874 ORTHO05D001049 1.3e-06 55.8 47 51.1
Lsat_1_v5_gn_1_50520 Lactuca sativa HOM05D000874 ORTHO05D001049 1.3e-06 55.8 49 49.0
HanXRQChr01g0028371 Helianthus annuus HOM05D000874 ORTHO05D001049 1.7e-06 55.5 47 46.8
FAN09G2693 Fragaria x ananassa HOM05D000874 ORTHO05D001049 2.3e-06 55.1 47 51.1
HanXRQChr01g0028361 Helianthus annuus HOM05D000874 ORTHO05D001049 2.3e-06 55.1 47 46.8
RcHm_v2.0_Chr3g0471901 Rosa chinensis HOM05D000874 ORTHO05D001049 2.3e-06 55.1 46 52.2
AUR62037888 Chenopodium quinoa HOM05D000874 ORTHO05D001049 3.9e-06 54.3 47 51.1
TWI53G1141 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 3.9e-06 54.3 45 55.6
FAN05G1754 Fragaria x ananassa HOM05D000874 ORTHO05D001049 5.1e-06 53.9 46 52.2
FAN05G3374 Fragaria x ananassa HOM05D000874 ORTHO05D001049 5.1e-06 53.9 46 52.2
FAN14G2137 Fragaria x ananassa HOM05D000874 ORTHO05D001049 5.1e-06 53.9 46 52.2
Manes.09G060716 Manihot esculenta HOM05D000874 ORTHO05D001049 5.1e-06 53.9 49 53.1
Lalb_Chr20g0112271 Lupinus albus HOM05D000874 ORTHO05D001049 6.6e-06 53.5 45 51.1
Psat3g036200 Pisum sativum HOM05D000874 ORTHO05D001049 8.6e-06 53.1 47 48.9
Sed0024499 Sechium edule HOM05D000874 ORTHO05D001049 8.6e-06 53.1 46 52.2


User provided reference genes

Program Settings