Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p65240 Brassica napus HOM05D003139 ORTHO05D003540 9.6e-25 115.9 55 100.0
BcaC02g07620 Brassica carinata HOM05D003139 ORTHO05D003540 1.8e-18 95.1 45 97.8
A04p27740 Brassica napus HOM05D003139 ORTHO05D003540 1.8e-18 95.1 45 97.8
BraA04t18268Z Brassica rapa HOM05D003139 ORTHO05D003540 1.8e-18 95.1 45 97.8
BolC4t28004H Brassica oleracea HOM05D003139 ORTHO05D003540 5.1e-18 93.6 45 95.6
BcaB06g28923 Brassica carinata HOM05D003139 ORTHO05D003540 2.4e-15 84.7 41 92.7
BraA05t19916Z Brassica rapa HOM05D003139 ORTHO05D003540 8.4e-13 76.3 39 84.6
AL4G32320 Arabidopsis lyrata HOM05D003139 ORTHO05D003540 1.1e-12 75.9 39 84.6
CARHR130460 Cardamine hirsuta HOM05D003139 ORTHO05D003540 1.4e-12 75.5 38 86.8
BcaC02g11724 Brassica carinata HOM05D003139 ORTHO05D003540 2.5e-12 74.7 39 82.1
C04p11930 Brassica napus HOM05D003139 ORTHO05D003540 2.5e-12 74.7 39 82.1
BolC4t22840H Brassica oleracea HOM05D003139 ORTHO05D003540 2.5e-12 74.7 39 82.1
Thhalv10017798m.g Eutrema salsugineum HOM05D003139 ORTHO05D003540 2.5e-12 74.7 38 84.2
Sp4g18440 Schrenkiella parvula HOM05D003139 ORTHO05D003540 2.5e-12 74.7 42 78.6
A05p09620 Brassica napus HOM05D003139 ORTHO05D003540 7.1e-12 73.2 39 79.5
AT2G36220 Arabidopsis thaliana HOM05D003139 ORTHO05D003540 9.3e-12 72.8 39 79.5
Carub.0004s1798 Capsella rubella HOM05D003139 ORTHO05D003540 1.3e-10 68.9 40 80.0
Thhalv10011162m.g Eutrema salsugineum HOM05D003139 ORTHO05D003540 3.0e-10 67.8 44 68.2
THA.LOC104827508 Tarenaya hassleriana HOM05D003139 ORTHO05D003540 5.1e-10 67.0 44 63.6
BcaC02g09232 Brassica carinata HOM05D003139 ORTHO05D003540 1.1e-09 65.9 38 73.7
CARHR162580 Cardamine hirsuta HOM05D003139 ORTHO05D003540 1.1e-09 65.9 38 76.3
AT3G52710 Arabidopsis thaliana HOM05D003139 ORTHO05D003540 1.9e-09 65.1 45 66.7
BcaB02g09375 Brassica carinata HOM05D003139 ORTHO05D003540 3.3e-09 64.3 45 68.9
C04p40300 Brassica napus HOM05D003139 ORTHO05D003540 4.3e-09 63.9 39 71.8
BolC4t25610H Brassica oleracea HOM05D003139 ORTHO05D003540 4.3e-09 63.9 39 71.8
AL5G33470 Arabidopsis lyrata HOM05D003139 ORTHO05D003540 7.4e-09 63.2 36 75.0
Sp5g09630 Schrenkiella parvula HOM05D003139 ORTHO05D003540 9.7e-09 62.8 39 69.2
Aa31LG10G7720 Aethionema arabicum HOM05D003139 ORTHO05D003540 2.2e-08 61.6 37 67.6
Thecc.05G090100 Theobroma cacao HOM05D003139 ORTHO05D003540 2.2e-08 61.6 39 61.5
Duzib106G1991 Durio zibethinus HOM05D003139 ORTHO05D003540 6.3e-08 60.1 39 59.0
Aa31LG5G21340 Aethionema arabicum HOM05D003139 ORTHO05D003540 8.2e-08 59.7 40 67.5
Gohir.D09G135100 Gossypium hirsutum HOM05D003139 ORTHO05D003540 8.2e-08 59.7 39 59.0
Gorai.006G155000 Gossypium raimondii HOM05D003139 ORTHO05D003540 8.2e-08 59.7 39 59.0
BcaB01g00349 Brassica carinata HOM05D003139 ORTHO05D003540 1.4e-07 58.9 39 64.1
TWI74G1218 Tripterygium wilfordii HOM05D003139 ORTHO05D003540 1.8e-07 58.5 41 58.5
Gohir.A04G062300 Gossypium hirsutum HOM05D003139 ORTHO05D003540 2.4e-07 58.2 35 60.0
COL.COLO4_29723 Corchorus olitorius HOM05D003139 ORTHO05D003540 3.1e-07 57.8 38 57.9
Gohir.A09G139500 Gossypium hirsutum HOM05D003139 ORTHO05D003540 3.1e-07 57.8 39 56.4
Carub.0005s1916 Capsella rubella HOM05D003139 ORTHO05D003540 5.3e-07 57.0 45 60.0
Duzib128G1370 Durio zibethinus HOM05D003139 ORTHO05D003540 5.3e-07 57.0 35 62.9
Gohir.D04G099100 Gossypium hirsutum HOM05D003139 ORTHO05D003540 5.3e-07 57.0 35 60.0
Gorai.009G401500 Gossypium raimondii HOM05D003139 ORTHO05D003540 5.3e-07 57.0 35 60.0
Sabra06G0163800 Salix brachista HOM05D003139 ORTHO05D003540 5.3e-07 57.0 38 57.9
THA.LOC104804904 Tarenaya hassleriana HOM05D003139 ORTHO05D003540 5.3e-07 57.0 43 60.5
Potri.006G212800 Populus trichocarpa HOM05D003139 ORTHO05D003540 6.9e-07 56.6 44 52.3
C08p27990 Brassica napus HOM05D003139 ORTHO05D003540 1.2e-06 55.8 38 60.5
BolC8t50411H Brassica oleracea HOM05D003139 ORTHO05D003540 1.2e-06 55.8 38 60.5
Cc06_g05890 Coffea canephora HOM05D003139 ORTHO05D003540 1.2e-06 55.8 56 48.2
FvH4_6g18850 Fragaria vesca HOM05D003139 ORTHO05D003540 1.2e-06 55.8 41 53.7
FAN05G0400 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.2e-06 55.8 41 53.7
FAN05G1773 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.2e-06 55.8 41 53.7
FAN09G1837 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.2e-06 55.8 41 53.7
FAN14G1758 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.2e-06 55.8 41 53.7
QL07p038927 Quercus lobata HOM05D003139 ORTHO05D003540 1.2e-06 55.8 41 56.1
Sabra16G0085400 Salix brachista HOM05D003139 ORTHO05D003540 1.5e-06 55.5 38 55.3
Sabra16G0087500 Salix brachista HOM05D003139 ORTHO05D003540 1.5e-06 55.5 38 55.3
CANSAT64G2974 Cannabis sativa HOM05D003139 ORTHO05D003540 2.0e-06 55.1 35 60.0
Potri.016G079500 Populus trichocarpa HOM05D003139 ORTHO05D003540 2.0e-06 55.1 38 55.3
Prupe.7G109200 Prunus persica HOM05D003139 ORTHO05D003540 2.0e-06 55.1 37 59.5
AUR62006190 Chenopodium quinoa HOM05D003139 ORTHO05D003540 2.6e-06 54.7 39 56.4
Gohir.A01G206000 Gossypium hirsutum HOM05D003139 ORTHO05D003540 2.6e-06 54.7 40 55.0
Gohir.D01G195400 Gossypium hirsutum HOM05D003139 ORTHO05D003540 2.6e-06 54.7 40 55.0
Gorai.002G239600 Gossypium raimondii HOM05D003139 ORTHO05D003540 2.6e-06 54.7 40 55.0
BcaC07g39636 Brassica carinata HOM05D003139 ORTHO05D003540 3.4e-06 54.3 38 57.9
CsaV3_3G037330 Cucumis sativus L. HOM05D003139 ORTHO05D003540 3.4e-06 54.3 35 57.1
ECA247G2190 Erigeron canadensis HOM05D003139 ORTHO05D003540 3.4e-06 54.3 35 60.0
FAN02G0223 Fragaria x ananassa HOM05D003139 ORTHO05D003540 3.4e-06 54.3 41 53.7
ClCG10G018920 Citrullus lanatus HOM05D003139 ORTHO05D003540 4.5e-06 53.9 52 46.2
MELO3C009477.2 Cucumis melo HOM05D003139 ORTHO05D003540 4.5e-06 53.9 35 57.1
MD12G1024700 Malus domestica HOM05D003139 ORTHO05D003540 4.5e-06 53.9 46 47.8
Dinv21200 Davidia involucrata HOM05D003139 ORTHO05D003540 5.9e-06 53.5 35 57.1
Duzib093G1338 Durio zibethinus HOM05D003139 ORTHO05D003540 5.9e-06 53.5 49 49.0
PGR142G1499 Punica granatum HOM05D003139 ORTHO05D003540 5.9e-06 53.5 35 57.1
Actinidia05423 Actinidia chinensis HOM05D003139 ORTHO05D003540 7.7e-06 53.1 35 57.1
BraA09t40041Z Brassica rapa HOM05D003139 ORTHO05D003540 7.7e-06 53.1 38 57.9
HanXRQChr08g0229891 Helianthus annuus HOM05D003139 ORTHO05D003540 7.7e-06 53.1 35 60.0
A09p45800 Brassica napus HOM05D003139 ORTHO05D003540 1.0e-05 52.8 38 57.9
Solyc09g009840.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 1.0e-05 52.8 42 54.8
Sopen09g004600 Solanum pennellii HOM05D003139 ORTHO05D003540 1.0e-05 52.8 42 54.8


User provided reference genes

Program Settings