Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p64910 Brassica napus HOM05D006703 ORTHO05D008389 1.1e-110 403.3 198 100.0
BcaC02g07656 Brassica carinata HOM05D006703 ORTHO05D008389 1.2e-109 399.8 198 99.0
BolC4t27966H Brassica oleracea HOM05D006703 ORTHO05D008389 3.0e-108 395.2 198 97.5
BraA04t18236Z Brassica rapa HOM05D006703 ORTHO05D008389 7.3e-107 390.6 198 96.5
A04p27380 Brassica napus HOM05D006703 ORTHO05D008389 2.3e-105 385.6 198 94.9
BcaB06g28891 Brassica carinata HOM05D006703 ORTHO05D008389 5.2e-89 331.3 201 86.1
Sp4g18150 Schrenkiella parvula HOM05D006703 ORTHO05D008389 1.3e-79 300.1 198 78.3
Thhalv10017281m.g Eutrema salsugineum HOM05D006703 ORTHO05D008389 3.8e-79 298.5 198 78.3
C03p23140 Brassica napus HOM05D006703 ORTHO05D008389 1.1e-78 297.0 199 79.4
BcaC01g05692 Brassica carinata HOM05D006703 ORTHO05D008389 2.4e-78 295.8 198 78.8
BolC3t14715H Brassica oleracea HOM05D006703 ORTHO05D008389 2.4e-78 295.8 198 78.8
BraA03t11234Z Brassica rapa HOM05D006703 ORTHO05D008389 2.4e-78 295.8 199 79.9
A03p19820 Brassica napus HOM05D006703 ORTHO05D008389 7.1e-78 294.3 199 78.9
CARHR130150 Cardamine hirsuta HOM05D006703 ORTHO05D008389 3.2e-70 268.9 200 73.5
AL4G32000 Arabidopsis lyrata HOM05D006703 ORTHO05D008389 4.2e-70 268.5 200 71.5
AT2G35900 Arabidopsis thaliana HOM05D006703 ORTHO05D008389 5.5e-70 268.1 200 71.0
Aa31LG5G21040 Aethionema arabicum HOM05D006703 ORTHO05D008389 1.9e-67 259.6 202 66.8
Carub.0004s1765 Capsella rubella HOM05D006703 ORTHO05D008389 1.1e-62 243.8 199 66.8
Manes.08G036200 Manihot esculenta HOM05D006703 ORTHO05D008389 1.1e-49 200.7 205 53.7
Potri.016G066800 Populus trichocarpa HOM05D006703 ORTHO05D008389 5.3e-49 198.4 203 52.7
Sabra16G0068200 Salix brachista HOM05D006703 ORTHO05D008389 5.3e-49 198.4 203 52.7
Hund14986 Selenicereus undatus HOM05D006703 ORTHO05D008389 8.5e-47 191.0 205 49.8
THA.LOC104823512 Tarenaya hassleriana HOM05D006703 ORTHO05D008389 8.5e-47 191.0 199 49.7
Gohir.A01G200000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 4.2e-46 188.7 203 50.7
Gorai.002G233800 Gossypium raimondii HOM05D006703 ORTHO05D008389 1.6e-45 186.8 203 49.8
Gohir.D01G190000 Gossypium hirsutum HOM05D006703 ORTHO05D008389 2.7e-45 186.0 203 49.8
Manes.09G042800 Manihot esculenta HOM05D006703 ORTHO05D008389 1.0e-44 184.1 203 49.3
Lj1A1058G53 Lonicera japonica HOM05D006703 ORTHO05D008389 5.7e-43 178.3 209 51.2
Duzib106G1644 Durio zibethinus HOM05D006703 ORTHO05D008389 1.3e-42 177.2 203 47.8
MELO3C009564.2 Cucumis melo HOM05D006703 ORTHO05D008389 1.7e-42 176.8 209 51.2
Thecc.05G108700 Theobroma cacao HOM05D006703 ORTHO05D008389 3.7e-42 175.6 204 48.0
ClCG10G018080 Citrullus lanatus HOM05D006703 ORTHO05D008389 2.4e-41 172.9 206 49.0
COL.COLO4_29515 Corchorus olitorius HOM05D006703 ORTHO05D008389 3.1e-41 172.6 203 46.8
CsaV3_3G038210 Cucumis sativus L. HOM05D006703 ORTHO05D008389 3.1e-41 172.6 209 52.2
Hma1.2p1_0401F.1_g144790 Hydrangea macrophylla HOM05D006703 ORTHO05D008389 4.1e-41 172.2 207 48.8
Atru.chr8.1299 Acer truncatum HOM05D006703 ORTHO05D008389 5.3e-41 171.8 165 53.9
RcHm_v2.0_Chr3g0477171 Rosa chinensis HOM05D006703 ORTHO05D008389 2.0e-40 169.9 201 48.8
TWI74G0187 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 2.0e-40 169.9 219 48.4
ECA233G5710 Erigeron canadensis HOM05D006703 ORTHO05D008389 2.6e-40 169.5 221 46.2
TAR636G3193 Trochodendron aralioides HOM05D004977 ORTHO05D006454 3.4e-40 169.1 190 48.9
PGR004G0398 Punica granatum HOM05D006703 ORTHO05D008389 4.5e-40 168.7 205 45.9
CANSAT64G1940 Cannabis sativa HOM05D006703 ORTHO05D008389 5.9e-40 168.3 207 45.4
AUR62030691 Chenopodium quinoa HOM05D006703 ORTHO05D008389 5.9e-40 168.3 201 46.3
Duzib093G0046 Durio zibethinus HOM05D006703 ORTHO05D008389 1.0e-39 167.5 202 46.5
Nitab4.5_0000721g0180 Nicotiana tabacum HOM05D006703 ORTHO05D008389 1.0e-39 167.5 212 48.1
MD14G1043200 Malus domestica HOM05D006703 ORTHO05D008389 1.7e-39 166.8 198 46.5
RcHm_v2.0_Chr3g0477081 Rosa chinensis HOM05D006703 ORTHO05D008389 2.9e-39 166.0 208 45.7
MSTRG.19329 Avicennia marina HOM05D006703 ORTHO05D008389 3.8e-39 165.6 207 45.4
GSVIVG01022605001 Vitis vinifera HOM05D006703 ORTHO05D008389 3.8e-39 165.6 207 45.9
FAN05G3633 Fragaria x ananassa HOM05D006703 ORTHO05D008389 6.5e-39 164.9 203 47.8
Nitab4.5_0001918g0020 Nicotiana tabacum HOM05D006703 ORTHO05D008389 6.5e-39 164.9 211 46.4
Actinidia37767 Actinidia chinensis HOM05D006703 ORTHO05D008389 8.5e-39 164.5 208 46.2
FAN05G2374 Fragaria x ananassa HOM05D006703 ORTHO05D008389 8.5e-39 164.5 203 47.8
QL07p026854 Quercus lobata HOM05D006703 ORTHO05D008389 8.5e-39 164.5 203 44.8
Medtr7g106660 Medicago truncatula HOM05D006703 ORTHO05D008389 1.4e-38 163.7 211 44.5
Sc22g0003150 Simmondsia chinensis HOM05D006703 ORTHO05D008389 1.4e-38 163.7 170 50.6
DCAR_013453 Daucus carota HOM05D006703 ORTHO05D008389 1.9e-38 163.3 205 43.9
Sed0006927 Sechium edule HOM05D006703 ORTHO05D008389 1.9e-38 163.3 205 44.4
Hund10833 Selenicereus undatus HOM05D006703 ORTHO05D008389 1.9e-38 163.3 205 45.4
FAN09G4763 Fragaria x ananassa HOM05D006703 ORTHO05D008389 3.2e-38 162.5 203 45.3
TWI77G0507 Tripterygium wilfordii HOM05D006703 ORTHO05D008389 3.2e-38 162.5 184 50.5
Rhsim03G0062400 Rhododendron simsii HOM05D006703 ORTHO05D008389 4.2e-38 162.2 206 47.6
Cfa020082 Carpinus fangiana HOM05D006703 ORTHO05D008389 9.4e-38 161.0 205 43.9
Ca_09072_v3 Cicer arietinum L. HOM05D006703 ORTHO05D008389 1.6e-37 160.2 211 43.1
Lj1g0009334 Lotus japonicus HOM05D006703 ORTHO05D008389 2.1e-37 159.8 209 42.1
Ah.12g059450 Amaranthus hybridus HOM05D001890 ORTHO05D003442 2.7e-37 159.5 208 44.2
MD12G1044300 Malus domestica HOM05D006703 ORTHO05D008389 4.7e-37 158.7 201 45.3
Psat3g028120 Pisum sativum HOM05D006703 ORTHO05D008389 4.7e-37 158.7 205 44.9
MSTRG.26583 Avicennia marina HOM05D006703 ORTHO05D008389 6.1e-37 158.3 201 46.8
FvH4_6g20830 Fragaria vesca HOM05D006703 ORTHO05D008389 6.1e-37 158.3 208 45.2
FAN14G3264 Fragaria x ananassa HOM05D006703 ORTHO05D008389 6.1e-37 158.3 208 45.2
Prupe.7G090900 Prunus persica HOM05D006703 ORTHO05D008389 6.1e-37 158.3 199 44.2
SGA_v2.0_scaffold31G12818 Striga asiatica HOM05D006703 ORTHO05D008389 6.1e-37 158.3 204 45.6
EL10Ac5g11822 Beta vulgaris HOM05D006703 ORTHO05D008389 1.4e-36 157.1 206 44.7
Oeu020165.3 Olea europaea HOM05D006703 ORTHO05D008389 3.0e-36 156.0 251 39.4
HanXRQChr13g0398671 Helianthus annuus HOM05D006703 ORTHO05D008389 5.1e-36 155.2 217 42.4
SGA_v2.0_scaffold392G50677 Striga asiatica HOM05D006703 ORTHO05D008389 5.1e-36 155.2 198 45.5
HanXRQChr02g0052921 Helianthus annuus HOM05D006703 ORTHO05D008389 6.7e-36 154.8 206 42.2
Phvul.001G197500 Phaseolus vulgaris HOM05D006703 ORTHO05D008389 1.1e-35 154.1 206 43.2
Sed0010784 Sechium edule HOM05D006703 ORTHO05D008389 1.1e-35 154.1 209 43.1
TPR.G34442 Trifolium pratense HOM05D006703 ORTHO05D008389 2.0e-35 153.3 216 41.7
EL10Ac9g21006 Beta vulgaris HOM05D006703 ORTHO05D008389 2.6e-35 152.9 206 43.7
Nn2g14390 Nelumbo nucifera HOM05D006703 ORTHO05D008389 3.3e-35 152.5 205 42.0
Eucgr.K01914 Eucalyptus grandis HOM05D006703 ORTHO05D008389 5.7e-35 151.8 211 42.7
CiPaw.09G023100 Carya illinoinensis HOM05D006703 ORTHO05D008389 9.7e-35 151.0 205 42.9
Lalb_Chr01g0017771 Lupinus albus HOM05D006703 ORTHO05D008389 1.3e-34 150.6 207 41.1
CiPaw.10G019700 Carya illinoinensis HOM05D006703 ORTHO05D008389 1.7e-34 150.2 207 43.0
Haze_20110 Corylus avellana HOM05D006703 ORTHO05D008389 2.2e-34 149.8 206 40.8
Migut.J00741 Erythranthe guttata HOM05D006703 ORTHO05D008389 2.2e-34 149.8 214 43.5
Peaxi162Scf00203g00910 Petunia axillaris HOM05D006703 ORTHO05D008389 3.7e-34 149.1 198 47.0
Glyma.03G204000 Glycine max HOM05D006703 ORTHO05D008389 4.8e-34 148.7 204 41.7
arahy.Tifrunner.gnm1.ann1.8DDT0E Arachis hypogaea HOM05D006703 ORTHO05D008389 8.2e-34 147.9 219 41.1
arahy.Tifrunner.gnm1.ann1.W58RTV Arachis hypogaea HOM05D006703 ORTHO05D008389 8.2e-34 147.9 219 41.1
Sopen10g032260 Solanum pennellii HOM05D006703 ORTHO05D008389 8.2e-34 147.9 213 41.8
PGSC0003DMG400028230 Solanum tuberosum HOM05D006703 ORTHO05D008389 1.4e-33 147.1 213 42.7
VMungo1383G2242 Vigna mungo HOM05D001890 ORTHO05D003442 1.8e-33 146.7 202 41.6
AUR62036335 Chenopodium quinoa HOM05D006703 ORTHO05D008389 2.0e-32 143.3 200 41.5
PSO017G1234 Papaver somniferum HOM05D006703 ORTHO05D008389 2.0e-32 143.3 151 47.0
FAN02G3199 Fragaria x ananassa HOM05D006703 ORTHO05D008389 2.6e-32 142.9 162 48.8
Solyc10g081750.1 Solanum lycopersicum HOM05D006703 ORTHO05D008389 2.6e-32 142.9 212 40.6
MBI05_g29094_MAGBIO Magnolia biondii HOM05D006703 ORTHO05D008389 3.5e-32 142.5 210 40.0
Aqoxy1G00585 Aquilegia oxysepala HOM05D006703 ORTHO05D008389 1.7e-31 140.2 191 45.5
vmacro07494 Vaccinium macrocarpon HOM05D006703 ORTHO05D008389 6.1e-29 131.7 296 32.1
ATR0697G151 Amborella trichopoda HOM05D006703 ORTHO05D008389 8.8e-28 127.9 146 45.2
Zm00001eb151930 Zea mays HOM05D006703 ORTHO05D008389 1.5e-27 127.1 178 41.6
Cc06_g06870 Coffea canephora HOM05D006703 ORTHO05D008389 5.7e-27 125.2 238 37.0
Os01g0771200 Oryza sativa ssp. japonica HOM05D006703 ORTHO05D008389 2.8e-26 122.9 166 41.6
CDE10G0766 Ceratophyllum demersum HOM05D006703 ORTHO05D008389 6.3e-26 121.7 130 45.4
unitig_749.g14212 Utricularia gibba HOM05D006703 ORTHO05D008389 7.7e-24 114.8 177 42.9
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 5.5e-22 108.6 133 46.6
Actinidia03862 Actinidia chinensis HOM05D006703 ORTHO05D008389 3.7e-18 95.9 140 42.9
Oeu045018.1 Olea europaea HOM05D006703 ORTHO05D008389 9.1e-17 91.3 91 50.5
Actinidia03970 Actinidia chinensis HOM05D006703 ORTHO05D008389 2.7e-16 89.7 171 36.8
SHI28311 Sapria himalayana HOM05D006703 ORTHO05D008389 3.0e-12 76.3 79 49.4
Mapoly0024s0129 Marchantia polymorpha HOM05D006703 ORTHO05D008389 2.4e-09 66.6 192 30.7
AagrBONN_evm.TU.Sc2ySwM_369.455 Anthoceros agrestis HOM05D006703 ORTHO05D008389 3.1e-09 66.2 122 32.8
SEGI_41401 Sequoiadendron giganteum HOM05D006703 ORTHO05D008389 3.8e-07 59.3 38 60.5
SEGI_14783 Sequoiadendron giganteum HOM05D000064 ORTHO05D008389 6.6e-07 58.5 63 47.6
Glyma.19G201366 Glycine max HOM05D006703 ORTHO05D008389 1.1e-06 57.8 124 30.6
CDE10G0313 Ceratophyllum demersum HOM05D006703 ORTHO05D001378 3.3e-06 56.2 90 34.4
Pp3c9_17430 Physcomitrium patens HOM05D006703 ORTHO05D008389 5.6e-06 55.5 122 35.2


User provided reference genes

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