Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.3e-140 503.1 255 100.0
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.3e-140 503.1 255 100.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 4.0e-126 454.9 253 89.7
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 2.6e-125 452.2 253 89.3
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.6e-119 433.0 223 96.0
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 9.4e-99 364.0 213 86.4
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 9.7e-88 327.4 193 83.9
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 5.3e-86 321.6 193 83.4
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.7e-79 298.9 186 79.6
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 5.9e-77 291.6 184 78.3
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 6.6e-76 288.1 194 72.2
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.0e-72 276.6 192 72.4
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 3.4e-72 275.8 164 81.1
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.1e-70 270.8 183 71.0
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 7.0e-70 268.1 202 67.3
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.2e-69 267.3 188 69.7
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.6e-69 266.9 190 71.1
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.5e-67 260.4 203 61.6
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 7.3e-67 258.1 180 67.2
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.6e-66 256.9 186 65.6
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.6e-66 255.8 186 66.1
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 8.0e-66 254.6 191 63.9
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 8.0e-66 254.6 180 66.1
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 8.0e-66 254.6 188 65.4
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.0e-65 254.2 180 65.6
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.0e-65 254.2 180 66.7
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.8e-65 253.4 196 61.2
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.8e-65 253.4 192 63.5
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 3.1e-65 252.7 185 65.4
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 4.0e-65 252.3 182 63.7
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 6.8e-65 251.5 187 63.6
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 6.8e-65 251.5 182 63.7
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 8.9e-65 251.1 185 63.8
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 3.4e-64 249.2 180 65.0
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.4e-64 248.8 185 65.4
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 5.8e-64 248.4 187 63.1
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.8e-64 248.4 179 64.2
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 5.8e-64 248.4 191 62.3
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.3e-63 247.3 179 65.4
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.2e-63 246.5 183 63.4
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 2.9e-63 246.1 190 62.6
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 4.9e-63 245.4 185 62.7
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 8.3e-63 244.6 183 61.7
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.4e-62 243.8 181 61.9
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.4e-62 243.8 181 65.2
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.9e-62 243.4 193 60.1
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 2.4e-62 243.0 188 63.3
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.4e-62 243.0 190 61.1
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 2.4e-62 243.0 183 62.8
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.2e-62 242.7 175 65.1
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 3.2e-62 242.7 180 62.2
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 3.2e-62 242.7 181 64.1
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 5.4e-62 241.9 186 64.0
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.2e-61 240.7 180 63.9
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.2e-61 240.7 192 60.4
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.2e-61 240.7 179 63.7
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.2e-61 240.7 179 63.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.7e-61 239.6 179 63.1
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.7e-61 239.6 186 61.3
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.0e-60 237.7 179 63.1
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.0e-60 237.7 180 63.9
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.0e-60 237.7 181 64.1
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.3e-60 237.3 180 62.2
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 2.3e-60 236.5 180 62.8
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.3e-60 236.5 185 61.1
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 3.0e-60 236.1 180 62.2
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 3.9e-60 235.7 180 62.2
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 5.0e-60 235.3 167 67.7
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 5.0e-60 235.3 182 61.5
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 5.0e-60 235.3 172 66.9
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 6.6e-60 235.0 184 60.9
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.1e-59 234.2 178 62.9
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.5e-59 233.8 181 63.5
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.5e-59 233.8 190 60.0
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 4.3e-59 232.3 187 58.8
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 4.3e-59 232.3 185 60.5
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 5.6e-59 231.9 182 62.1
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.6e-58 230.3 192 57.8
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.6e-58 230.3 182 58.8
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 2.1e-58 229.9 183 61.2
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.6e-58 229.2 176 61.9
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 4.7e-58 228.8 182 61.0
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 8.1e-58 228.0 166 70.5
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 4.0e-57 225.7 164 65.2
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 6.8e-57 224.9 167 68.9
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 6.8e-57 224.9 185 60.0
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 6.8e-57 224.9 172 65.1
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 8.9e-57 224.6 165 66.1
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.5e-56 223.8 159 66.7
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 2.0e-56 223.4 196 58.7
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 2.6e-56 223.0 192 57.3
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 4.4e-56 222.2 180 61.7
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 7.5e-56 221.5 187 57.2
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.3e-55 220.7 181 63.0
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.3e-55 220.7 186 57.0
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.9e-55 219.5 191 56.0
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 4.9e-55 218.8 180 57.8
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.4e-54 217.2 202 55.0
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.9e-54 216.9 173 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 2.4e-54 216.5 179 58.1
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 5.4e-54 215.3 175 58.9
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 7.1e-54 214.9 192 54.2
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.6e-53 213.8 182 57.1
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.7e-52 210.3 182 56.0
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.3e-52 209.9 185 55.1
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 5.1e-52 208.8 178 58.4
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.2e-48 197.6 148 62.8
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.7e-47 193.7 159 60.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.1e-46 191.0 198 48.5
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 2.1e-45 186.8 133 65.4
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.9e-43 180.3 131 62.6
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 5.6e-43 178.7 185 48.1
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 4.7e-42 175.6 135 60.0
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.2e-42 175.3 165 51.5
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.8e-41 173.7 165 55.8
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.2e-41 172.2 168 48.2
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 8.9e-41 171.4 133 58.6
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.0e-40 170.2 115 73.0
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.0e-40 170.2 168 48.2
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.9e-40 167.9 152 52.0
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.4e-39 165.2 164 48.2
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 2.1e-37 160.2 112 64.3
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.3e-35 152.9 136 51.5
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 3.1e-33 146.4 180 44.4
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 5.3e-33 145.6 190 41.6
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.9e-33 145.2 125 53.6
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.2e-32 144.4 102 65.7
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.2e-31 140.2 193 40.4
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.8e-31 139.4 121 57.0
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.5e-29 132.9 168 41.7
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 7.9e-29 131.7 180 42.2
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 4.3e-27 125.9 188 39.4
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.8e-24 115.5 86 61.6
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.8e-17 94.0 96 43.8
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.3e-14 81.6 115 39.1
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 2.8e-10 70.1 110 38.2
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 3.7e-10 69.7 52 65.4
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 3.1e-09 66.6 50 64.0
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.6e-08 62.0 58 56.9
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.3e-07 61.2 53 64.2
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.2e-07 60.5 53 50.9
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-06 58.2 48 60.4


User provided reference genes

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