Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 2.8e-132 475.3 243 100.0
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 8.6e-126 453.8 243 96.7
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.2e-122 443.4 250 94.4
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.1e-120 436.8 251 92.8
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 6.8e-115 417.5 221 97.7
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.9e-112 409.5 250 87.2
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 8.1e-108 394.0 248 84.7
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 8.9e-107 390.6 247 84.2
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 8.9e-107 390.6 247 84.2
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 1.5e-106 389.8 247 85.0
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 1.4e-104 383.3 248 83.9
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 2.4e-104 382.5 248 83.5
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 1.6e-103 379.8 249 81.9
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.1e-101 373.6 248 81.9
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 6.2e-100 367.9 248 80.6
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 3.4e-98 362.1 250 80.4
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 2.2e-97 359.4 251 78.9
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.7e-81 306.6 250 66.8
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 6.4e-81 304.7 252 66.7
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 2.5e-80 302.8 252 65.5
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 1.6e-79 300.1 252 64.3
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 6.7e-78 294.7 250 64.8
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 1.9e-77 293.1 253 61.7
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.9e-77 293.1 253 61.7
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.9e-77 293.1 253 61.7
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.5e-77 292.7 253 61.7
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 4.3e-77 292.0 250 64.0
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 4.3e-77 292.0 250 63.6
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.6e-77 291.6 250 63.6
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 5.6e-77 291.6 250 63.2
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 7.4e-77 291.2 251 63.3
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 7.4e-77 291.2 252 61.9
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 9.6e-77 290.8 252 62.7
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 2.8e-76 289.3 252 63.9
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 2.8e-76 289.3 250 63.2
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.8e-76 289.3 249 63.5
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 2.8e-76 289.3 253 60.9
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 2.8e-76 289.3 253 61.7
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 3.7e-76 288.9 250 64.0
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 3.7e-76 288.9 252 65.1
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.8e-76 288.5 255 61.2
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 4.8e-76 288.5 248 62.9
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 8.2e-76 287.7 256 64.1
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 8.2e-76 287.7 254 63.0
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.2e-76 287.7 250 63.6
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 1.1e-75 287.3 250 62.4
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 1.1e-75 287.3 246 63.0
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.1e-75 287.3 250 63.2
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.8e-75 286.6 252 61.9
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.8e-75 286.6 253 61.3
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 2.4e-75 286.2 249 63.5
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 5.3e-75 285.0 250 62.4
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.2e-74 283.9 250 61.2
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 1.5e-74 283.5 252 61.9
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 2.0e-74 283.1 253 60.5
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.6e-74 282.7 250 62.8
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 4.5e-74 282.0 246 62.6
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 5.8e-74 281.6 254 62.6
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 7.6e-74 281.2 250 63.2
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.0e-73 280.8 255 60.8
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.0e-73 280.8 249 61.8
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.0e-73 280.8 255 62.0
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.3e-73 280.4 250 60.4
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 1.3e-73 280.4 250 60.4
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.3e-73 280.4 250 61.6
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.7e-73 280.0 254 61.8
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 1.7e-73 280.0 249 62.7
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 6.5e-73 278.1 252 63.5
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 6.5e-73 278.1 249 61.8
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 8.4e-73 277.7 194 74.2
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 8.4e-73 277.7 259 59.8
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 1.4e-72 276.9 204 69.6
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.4e-72 276.9 217 66.4
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.5e-72 276.2 239 63.2
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 3.2e-72 275.8 251 61.8
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 3.2e-72 275.8 251 61.0
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 5.5e-72 275.0 251 61.4
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 9.3e-72 274.2 251 61.4
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.6e-71 273.5 192 73.4
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 1.6e-71 273.5 252 61.1
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.6e-71 273.5 216 65.7
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 1.6e-71 273.5 250 60.8
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.7e-71 272.7 225 64.0
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 6.1e-71 271.6 254 60.6
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 6.1e-71 271.6 193 71.0
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 7.9e-71 271.2 191 71.2
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 7.9e-71 271.2 222 64.4
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 7.9e-71 271.2 193 71.0
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.8e-70 270.0 238 60.1
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 3.0e-70 269.2 248 60.1
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 3.9e-70 268.9 254 60.6
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 5.1e-70 268.5 250 61.6
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.1e-69 267.3 243 61.7
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.1e-69 267.3 255 60.4
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.1e-69 267.3 250 59.2
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 1.1e-69 267.3 254 61.0
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 2.5e-69 266.2 191 71.2
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.7e-69 265.0 217 63.6
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 7.4e-69 264.6 255 60.4
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 7.4e-69 264.6 242 62.0
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 2.2e-68 263.1 190 67.9
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 6.3e-68 261.5 236 61.9
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.1e-67 260.8 191 68.1
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.8e-67 260.0 227 61.7
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 4.1e-67 258.8 251 57.8
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 2.6e-66 256.1 188 69.7
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.3e-65 253.8 191 68.1
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.3e-65 253.8 250 57.2
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 6.1e-63 245.0 250 54.0
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 7.9e-63 244.6 160 75.0
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 2.3e-62 243.0 230 59.6
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 5.7e-61 238.4 160 71.2
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.7e-60 236.9 222 59.0
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.4e-58 229.2 210 61.9
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.2e-57 226.5 241 53.5
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 4.2e-56 222.2 111 96.4
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.9e-48 196.8 121 77.7
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 9.4e-48 194.5 121 74.4
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 2.7e-47 193.0 120 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 8.2e-44 181.4 175 50.9
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.2e-41 173.3 227 44.5
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.8e-41 172.6 181 54.1
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 2.7e-39 166.4 153 58.2
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.0e-37 160.2 193 44.6
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 5.7e-37 158.7 201 42.3
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.2e-36 156.8 182 46.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.4e-29 132.5 173 42.8
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 3.1e-27 126.3 168 36.9
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 3.4e-21 106.3 68 72.1
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 3.3e-16 89.7 159 28.9
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 1.4e-11 74.3 215 30.2
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 3.2e-11 73.2 124 45.2
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.7e-09 67.4 115 40.9
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 5.6e-08 62.4 109 41.3


User provided reference genes

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