Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p64520 Brassica napus HOM05D009099 ORTHO05D014276 3.1e-159 565.1 282 100.0
BcaC02g07692 Brassica carinata HOM05D009099 ORTHO05D014276 7.2e-92 341.3 184 93.5
C03p49580 Brassica napus HOM05D009099 ORTHO05D014276 9.2e-71 271.2 134 97.0
BolC4t27933H Brassica oleracea HOM05D009099 ORTHO05D014276 1.2e-67 260.8 125 99.2
C06p34850 Brassica napus HOM05D009099 ORTHO05D014276 5.2e-66 255.4 134 94.0
C09p05310 Brassica napus HOM05D009099 ORTHO05D014276 1.2e-65 254.2 126 96.0
BolC3t17256H Brassica oleracea HOM05D009099 ORTHO05D014276 9.8e-65 251.1 125 95.2
BcaC09g47899 Brassica carinata HOM05D006138 ORTHO05D032537 1.9e-44 183.7 118 80.5
C07p60370 Brassica napus HOM05D000451 ORTHO05D014276 9.6e-44 181.4 95 91.6
BcaC04g23728 Brassica carinata HOM05D009099 ORTHO05D014276 3.4e-41 172.9 89 89.9
A03p52750 Brassica napus HOM05D000451 ORTHO05D000351 4.8e-35 152.5 77 89.6
BraA03t14349Z Brassica rapa HOM05D000451 ORTHO05D000351 6.2e-35 152.1 77 88.3
C07p51180 Brassica napus HOM05D000451 ORTHO05D000351 1.7e-32 144.1 77 84.4
BolC7t45620H Brassica oleracea HOM05D000451 ORTHO05D000351 1.7e-32 144.1 77 84.4
BcaC06g30662 Brassica carinata HOM05D000451 ORTHO05D000351 2.9e-32 143.3 95 69.5
Sp7g19550 Schrenkiella parvula HOM05D000451 ORTHO05D000351 1.0e-29 134.8 92 65.2
BcaC09g51224 Brassica carinata HOM05D000451 ORTHO05D000351 2.3e-29 133.7 96 62.5
C01p15330 Brassica napus HOM05D000451 ORTHO05D000351 6.6e-29 132.1 96 61.5
BolC1t01487H Brassica oleracea HOM05D000451 ORTHO05D000351 6.6e-29 132.1 96 61.5
AL7G32650 Arabidopsis lyrata HOM05D000451 ORTHO05D000351 1.5e-28 131.0 100 62.0
BcaNung02800 Brassica carinata HOM05D000451 ORTHO05D000351 1.9e-28 130.6 96 62.5
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 1.9e-28 130.6 89 75.3
A01p12740 Brassica napus HOM05D000451 ORTHO05D000351 2.5e-28 130.2 74 74.3
BraA01t01217Z Brassica rapa HOM05D000451 ORTHO05D000351 2.5e-28 130.2 74 74.3
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 3.3e-28 129.8 84 78.6
BolC5t33834H Brassica oleracea HOM05D006138 ORTHO05D032537 3.3e-28 129.8 121 64.5
AT4G21430 Arabidopsis thaliana HOM05D000451 ORTHO05D000351 7.4e-28 128.6 100 61.0
Thhalv10024332m.g Eutrema salsugineum HOM05D000451 ORTHO05D000351 1.3e-27 127.9 81 71.6
C02p59990 Brassica napus HOM05D006138 ORTHO05D032537 1.6e-27 127.5 89 74.2
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 3.6e-27 126.3 84 77.4
Carub.0007s2000 Capsella rubella HOM05D000451 ORTHO05D000351 8.1e-27 125.2 96 60.4
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.2e-22 111.3 77 72.7
THA.LOC104806269 Tarenaya hassleriana HOM05D000451 ORTHO05D000351 2.1e-22 110.5 78 64.1
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 3.5e-22 109.8 80 70.0
Aa31LG6G3440 Aethionema arabicum HOM05D000451 ORTHO05D000351 4.6e-22 109.4 81 63.0
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 8.1e-19 98.6 89 61.8
Cpa.g.sc27.138 Carica papaya HOM05D000451 ORTHO05D014276 5.3e-18 95.9 73 54.8
Ciclev10018309m.g Citrus clementina HOM05D000451 ORTHO05D000351 8.4e-16 88.6 83 47.0
Phvul.002G220900 Phaseolus vulgaris HOM05D000451 ORTHO05D000351 8.4e-16 88.6 81 46.9
Oeu050817.1 Olea europaea HOM05D000451 ORTHO05D000351 1.9e-15 87.4 92 45.7
Thecc.06G201800 Theobroma cacao HOM05D000451 ORTHO05D000351 1.9e-15 87.4 82 47.6
Glyma.08G060200 Glycine max HOM05D000451 ORTHO05D000351 2.5e-15 87.0 78 46.2
PGR004G0305 Punica granatum HOM05D000451 ORTHO05D000351 2.5e-15 87.0 82 45.1
PGR038G0004 Punica granatum HOM05D000451 ORTHO05D000351 2.5e-15 87.0 82 45.1
TWI63G1167 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 3.2e-15 86.7 104 39.4
Haze_06592 Corylus avellana HOM05D000451 ORTHO05D000351 4.2e-15 86.3 81 46.9
Duzib235G0293 Durio zibethinus HOM05D000451 ORTHO05D000351 4.2e-15 86.3 82 46.3
Oeu016132.1 Olea europaea HOM05D000451 ORTHO05D000351 4.2e-15 86.3 68 54.4
BcaNung02799 Brassica carinata HOM05D000451 ORTHO05D000351 5.5e-15 85.9 45 77.8
Duzib160G0721 Durio zibethinus HOM05D000451 ORTHO05D000351 9.3e-15 85.1 82 46.3
Peaxi162Scf01391g00216 Petunia axillaris HOM05D000451 ORTHO05D000351 9.3e-15 85.1 69 60.9
Rhsim13G0169100 Rhododendron simsii HOM05D000451 ORTHO05D000351 1.2e-14 84.7 100 45.0
vmacro03801 Vaccinium macrocarpon HOM05D000451 ORTHO05D000351 1.2e-14 84.7 100 47.0
CANSAT56G1620 Cannabis sativa HOM05D000451 ORTHO05D000351 1.6e-14 84.3 99 41.4
Migut.H01525 Erythranthe guttata HOM05D000451 ORTHO05D000351 2.7e-14 83.6 80 51.2
Glyma.07G189100 Glycine max HOM05D000451 ORTHO05D000351 2.7e-14 83.6 77 44.2
Gohir.A10G022100 Gossypium hirsutum HOM05D000451 ORTHO05D000351 2.7e-14 83.6 82 47.6
Gorai.011G024000 Gossypium raimondii HOM05D000451 ORTHO05D000351 2.7e-14 83.6 82 47.6
MD10G1304800 Malus domestica HOM05D000451 ORTHO05D000351 3.5e-14 83.2 84 50.0
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 6.0e-14 82.4 82 57.3
Cfa000339 Carpinus fangiana HOM05D000451 ORTHO05D000351 7.9e-14 82.0 81 44.4
Hma1.2p1_1515F.1_g288170 Hydrangea macrophylla HOM05D000451 ORTHO05D000351 7.9e-14 82.0 82 46.3
Dinv40468 Davidia involucrata HOM05D000451 ORTHO05D000351 1.0e-13 81.6 100 39.0
Eucgr.D00753 Eucalyptus grandis HOM05D000451 ORTHO05D000351 1.0e-13 81.6 78 42.3
CAN.G424.31 Capsicum annuum HOM05D000451 ORTHO05D000351 1.8e-13 80.9 69 56.5
Manes.16G019400 Manihot esculenta HOM05D000451 ORTHO05D000351 3.0e-13 80.1 86 43.0
TAR629G3465 Trochodendron aralioides HOM05D000451 ORTHO05D000351 3.9e-13 79.7 81 44.4
Actinidia26986 Actinidia chinensis HOM05D000774 ORTHO05D000602 5.1e-13 79.3 78 48.7
arahy.Tifrunner.gnm1.ann1.BL8W3W Arachis hypogaea HOM05D000451 ORTHO05D000351 5.1e-13 79.3 81 42.0
Cc02_g12300 Coffea canephora HOM05D000451 ORTHO05D000351 6.7e-13 79.0 80 51.2
MBI18_g26026_MAGBIO Magnolia biondii HOM05D000451 ORTHO05D000351 8.7e-13 78.6 85 45.9
Sabra04G0018800 Salix brachista HOM05D000451 ORTHO05D000351 8.7e-13 78.6 77 46.8
Sed0011802 Sechium edule HOM05D000451 ORTHO05D000351 8.7e-13 78.6 81 43.2
arahy.Tifrunner.gnm1.ann1.AKBJ55 Arachis hypogaea HOM05D000451 ORTHO05D000351 1.1e-12 78.2 71 46.5
Potri.004G032700 Populus trichocarpa HOM05D000451 ORTHO05D000351 1.1e-12 78.2 77 48.1
MD05G1326700 Malus domestica HOM05D000451 ORTHO05D000351 1.9e-12 77.4 85 48.2
Prupe.4G034800 Prunus persica HOM05D000451 ORTHO05D000351 1.9e-12 77.4 85 48.2
Sed0002365 Sechium edule HOM05D000451 ORTHO05D000351 1.9e-12 77.4 81 40.7
arahy.Tifrunner.gnm1.ann1.HA6SXM Arachis hypogaea HOM05D000451 ORTHO05D000351 2.5e-12 77.0 70 48.6
arahy.Tifrunner.gnm1.ann1.SL1AZZ Arachis hypogaea HOM05D000451 ORTHO05D000351 2.5e-12 77.0 70 48.6
QL05p080957 Quercus lobata HOM05D000451 ORTHO05D000351 2.5e-12 77.0 83 48.2
Solyc02g079300.3 Solanum lycopersicum HOM05D000451 ORTHO05D000351 2.5e-12 77.0 84 44.0
Sopen02g024120 Solanum pennellii HOM05D000451 ORTHO05D000351 2.5e-12 77.0 84 44.0
Gohir.D10G022900 Gossypium hirsutum HOM05D000451 ORTHO05D000351 4.3e-12 76.3 80 46.2
RcHm_v2.0_Chr5g0005871 Rosa chinensis HOM05D000451 ORTHO05D000351 4.3e-12 76.3 89 46.1
TPR.G15382 Trifolium pratense HOM05D000451 ORTHO05D014276 4.3e-12 76.3 72 47.2
ClCG01G022420 Citrullus lanatus HOM05D000451 ORTHO05D000351 5.7e-12 75.9 95 40.0
DCAR_024927 Daucus carota HOM05D000451 ORTHO05D000351 7.4e-12 75.5 115 36.5
Manes.17G033900 Manihot esculenta HOM05D000451 ORTHO05D000351 7.4e-12 75.5 83 41.0
Medtr4g091520 Medicago truncatula HOM05D000451 ORTHO05D000351 1.6e-11 74.3 80 46.2
Potri.011G041400 Populus trichocarpa HOM05D000451 ORTHO05D000351 1.6e-11 74.3 73 43.8
Ca_18473_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 2.1e-11 73.9 85 44.7
Sc17g0006740 Simmondsia chinensis HOM05D000451 ORTHO05D000351 2.1e-11 73.9 81 45.7
AUR62014694 Chenopodium quinoa HOM05D000451 ORTHO05D000351 2.8e-11 73.6 81 44.4
Lj4g0018925 Lotus japonicus HOM05D000451 ORTHO05D000351 2.8e-11 73.6 77 46.8
Hund21288 Selenicereus undatus HOM05D000451 ORTHO05D000351 2.8e-11 73.6 81 45.7
FAN11G3058 Fragaria x ananassa HOM05D000451 ORTHO05D000351 4.8e-11 72.8 75 46.7
CsaV3_6G049610 Cucumis sativus L. HOM05D000451 ORTHO05D000351 8.2e-11 72.0 95 38.9
DCAR_028148 Daucus carota HOM05D000451 ORTHO05D000351 8.2e-11 72.0 81 40.7
Psat7g107840 Pisum sativum HOM05D000451 ORTHO05D000351 1.1e-10 71.6 74 47.3
Lsat_1_v5_gn_7_20480 Lactuca sativa HOM05D000451 ORTHO05D000351 1.4e-10 71.2 78 43.6
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 1.8e-10 70.9 89 48.3
EL10Ac8g20551 Beta vulgaris HOM05D000451 ORTHO05D000351 2.4e-10 70.5 84 42.9
MELO3C007332.2 Cucumis melo HOM05D000451 ORTHO05D000351 3.1e-10 70.1 95 37.9
Lalb_Chr20g0122371 Lupinus albus HOM05D000451 ORTHO05D000351 3.1e-10 70.1 71 46.5
Nn1g03849 Nelumbo nucifera HOM05D000451 ORTHO05D000351 3.1e-10 70.1 80 40.0
FvH4_3g03760 Fragaria vesca HOM05D000451 ORTHO05D000351 4.1e-10 69.7 75 45.3
FAN16G2895 Fragaria x ananassa HOM05D000451 ORTHO05D000351 4.1e-10 69.7 75 45.3
FAN21G1007 Fragaria x ananassa HOM05D000451 ORTHO05D000351 4.1e-10 69.7 75 45.3
Lj6g0021099 Lotus japonicus HOM05D000451 ORTHO05D000351 4.1e-10 69.7 69 49.3
HanXRQChr05g0131101 Helianthus annuus HOM05D000451 ORTHO05D000351 9.0e-10 68.6 94 40.4
Lalb_Chr05g0218121 Lupinus albus HOM05D000451 ORTHO05D000351 9.0e-10 68.6 73 45.2
VMungo0540G0946 Vigna mungo HOM05D000451 ORTHO05D000351 1.2e-09 68.2 81 43.2
ECA236G3876 Erigeron canadensis HOM05D000451 ORTHO05D000351 1.5e-09 67.8 77 48.1
Ah.14g088800 Amaranthus hybridus HOM05D000451 ORTHO05D000351 2.0e-09 67.4 85 40.0
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 2.0e-09 67.4 89 47.2
GSVIVG01003670001 Vitis vinifera HOM05D000451 ORTHO05D014276 4.5e-09 66.2 80 42.5
Os07g0557500 Oryza sativa ssp. japonica HOM05D000451 ORTHO05D000351 5.9e-09 65.9 98 34.7
PSO675G6504 Papaver somniferum HOM05D000451 ORTHO05D000351 1.0e-08 65.1 78 38.5
unitig_0.g939 Utricularia gibba HOM05D000451 ORTHO05D000351 1.3e-08 64.7 66 47.0
Ah.09g236400 Amaranthus hybridus HOM05D000451 ORTHO05D000351 1.7e-08 64.3 100 38.0
FAN25G3187 Fragaria x ananassa HOM05D000451 ORTHO05D000351 2.9e-08 63.5 75 44.0
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 5.0e-08 62.8 88 45.5
Lalb_Chr18g0059971 Lupinus albus HOM05D000451 ORTHO05D000351 5.0e-08 62.8 75 41.3
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 6.5e-08 62.4 85 47.1
Lsat_1_v5_gn_4_58620 Lactuca sativa HOM05D000451 ORTHO05D000351 1.1e-07 61.6 100 35.0
HanXRQChr15g0482571 Helianthus annuus HOM05D000451 ORTHO05D000351 1.4e-07 61.2 75 45.3
CDE05G0587 Ceratophyllum demersum HOM05D000451 ORTHO05D000602 1.9e-07 60.8 80 37.5
Manes.07G075137 Manihot esculenta HOM05D000451 ORTHO05D000351 2.5e-07 60.5 63 39.7
Psat1g209240 Pisum sativum HOM05D000451 ORTHO05D000351 3.2e-07 60.1 69 40.6
SHI02150 Sapria himalayana HOM05D000451 ORTHO05D000351 4.2e-07 59.7 101 32.7
PSO541G3320 Papaver somniferum HOM05D000451 ORTHO05D000351 5.5e-07 59.3 78 37.2
Phvul.006G193200 Phaseolus vulgaris HOM05D000451 ORTHO05D000351 5.5e-07 59.3 81 39.5
TPR.G36777 Trifolium pratense HOM05D000451 ORTHO05D000351 5.5e-07 59.3 69 42.0
Zm00001eb323940 Zea mays HOM05D000451 ORTHO05D037863 5.5e-07 59.3 82 39.0
HanXRQChr16g0517201 Helianthus annuus HOM05D000451 ORTHO05D000351 7.2e-07 58.9 121 33.9
Zm00001eb106740 Zea mays HOM05D000451 ORTHO05D037863 7.2e-07 58.9 78 35.9
Glyma.15G066600 Glycine max HOM05D000451 ORTHO05D000351 9.3e-07 58.5 67 44.8
Medtr2g011630 Medicago truncatula HOM05D000451 ORTHO05D000351 1.2e-06 58.2 70 37.1
ECA234G2810 Erigeron canadensis HOM05D000451 ORTHO05D000351 1.6e-06 57.8 68 38.2
Glyma.13G247400 Glycine max HOM05D000451 ORTHO05D000351 2.1e-06 57.4 67 41.8
C07p60430 Brassica napus HOM05D000032 ORTHO05D014276 7.9e-06 55.5 28 89.3


User provided reference genes

Program Settings