Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 2.6e-138 495.4 246 100.0
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 2.6e-138 495.4 246 100.0
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.4e-136 489.6 246 98.8
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 3.9e-126 454.9 249 92.4
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 3.3e-125 451.8 249 92.0
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 3.1e-123 445.3 250 90.8
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 7.6e-122 440.7 253 88.9
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 6.5e-121 437.6 251 89.6
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 6.0e-119 431.0 249 87.6
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.0e-118 430.3 250 88.0
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 5.1e-118 427.9 247 87.4
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 5.1e-118 427.9 247 87.4
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 5.7e-117 424.5 252 85.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 5.7e-117 424.5 255 84.3
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 7.4e-117 424.1 252 85.7
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 4.1e-115 418.3 249 86.7
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 7.6e-114 414.1 251 84.9
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.1e-112 410.2 249 81.1
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 6.1e-103 377.9 256 75.8
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 2.9e-97 359.0 244 72.1
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 4.7e-95 351.7 230 72.6
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 3.0e-94 349.0 234 70.1
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 2.0e-93 346.3 238 70.6
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.7e-93 344.7 213 75.1
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 4.8e-92 341.7 238 67.6
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 6.3e-92 341.3 208 76.4
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 8.2e-92 340.9 242 68.6
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.1e-91 340.5 222 81.5
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.4e-91 340.1 230 70.4
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.4e-91 339.3 247 70.0
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 4.1e-91 338.6 239 69.5
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 7.0e-91 337.8 244 68.0
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.2e-90 337.0 204 74.5
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.2e-90 337.0 202 76.2
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.2e-90 337.0 229 72.1
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.2e-90 337.0 230 72.2
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.6e-90 336.7 245 68.6
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.6e-90 336.7 243 66.3
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 3.5e-90 335.5 243 67.9
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.5e-90 335.5 243 67.9
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 3.8e-89 332.0 229 69.9
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 3.8e-89 332.0 243 65.8
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 3.8e-89 332.0 243 67.1
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.8e-89 332.0 243 67.1
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.8e-89 332.0 243 67.1
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 3.8e-89 332.0 205 74.1
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 3.8e-89 332.0 205 74.1
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 3.8e-89 332.0 209 73.2
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 6.5e-89 331.3 245 66.5
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 8.5e-89 330.9 204 74.5
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 8.5e-89 330.9 209 72.7
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.1e-88 330.5 243 67.1
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 1.9e-88 329.7 244 65.6
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 3.2e-88 328.9 244 64.8
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 9.4e-88 327.4 245 66.1
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 9.4e-88 327.4 202 73.8
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.2e-87 327.0 244 66.0
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.2e-87 327.0 245 66.1
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 1.6e-87 326.6 203 73.9
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 1.6e-87 326.6 248 64.5
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.1e-87 326.2 215 72.1
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.1e-87 326.2 202 73.8
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 3.6e-87 325.5 241 66.4
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 4.7e-87 325.1 243 64.6
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 4.7e-87 325.1 202 72.8
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 4.7e-87 325.1 245 65.3
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 8.0e-87 324.3 229 69.9
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.0e-86 323.9 248 64.9
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.4e-86 323.6 230 66.1
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.4e-86 323.6 214 70.6
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.4e-86 323.6 230 68.7
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.8e-86 323.2 223 67.7
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 2.3e-86 322.8 202 74.8
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 4.0e-86 322.0 244 62.7
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 5.2e-86 321.6 246 63.4
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.1e-85 320.5 202 70.8
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-85 320.5 242 63.2
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-85 320.5 246 63.4
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.5e-85 320.1 230 67.8
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.5e-85 320.1 198 73.2
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.5e-85 320.1 261 60.9
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.6e-85 319.3 243 63.0
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 4.4e-85 318.5 243 62.6
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 4.4e-85 318.5 241 64.3
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 5.7e-85 318.2 245 62.9
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 7.5e-85 317.8 210 69.0
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.3e-84 317.0 246 63.8
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 2.8e-84 315.8 237 62.9
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.8e-84 315.8 222 72.1
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 4.8e-84 315.1 202 71.3
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 6.3e-84 314.7 240 63.8
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 8.2e-84 314.3 208 69.7
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.4e-83 313.5 244 63.1
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 9.1e-83 310.8 231 63.6
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.6e-82 310.1 250 61.6
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.7e-81 306.6 235 62.1
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 1.1e-80 303.9 216 65.3
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.1e-80 303.9 257 60.3
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 4.2e-80 302.0 201 68.2
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.2e-80 302.0 290 54.5
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 5.5e-80 301.6 193 70.5
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 2.1e-79 299.7 196 69.4
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 3.7e-76 288.9 172 75.6
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.0e-74 283.1 230 63.5
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.0e-73 280.8 251 54.6
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.3e-73 280.4 348 45.1
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 3.8e-73 278.9 204 62.7
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 2.5e-72 276.2 243 58.8
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 8.3e-68 261.2 158 77.2
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.5e-61 240.4 312 44.6
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 4.4e-61 238.8 154 78.6
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 3.7e-60 235.7 136 79.4
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.4e-59 233.8 278 48.2
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 4.6e-58 228.8 169 71.6
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 3.3e-56 222.6 245 49.4
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 1.6e-55 220.3 191 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 2.3e-54 216.5 189 51.3
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 4.9e-52 208.8 231 50.2
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.9e-51 206.8 146 63.7
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 2.0e-50 203.4 119 79.0
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 1.4e-46 190.7 190 44.2
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 3.5e-42 176.0 106 75.5
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.0e-41 174.5 241 39.4
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.5e-40 170.6 99 80.8
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.9e-40 170.2 99 80.8
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 7.3e-40 168.3 102 74.5
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 3.4e-37 159.5 142 54.9
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.2e-36 156.8 99 72.7
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 6.4e-36 155.2 186 51.6
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 4.1e-35 152.5 97 72.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 2.7e-34 149.8 87 81.6
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 9.6e-32 141.4 144 52.1
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 4.0e-30 136.0 84 70.2
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.0e-29 133.7 92 77.2
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.6e-29 133.3 89 78.7
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 3.4e-29 132.9 69 94.2
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 9.9e-29 131.3 72 90.3
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 9.9e-29 131.3 88 78.4
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 9.9e-29 131.3 72 90.3
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 1.5e-24 117.5 101 50.5
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 2.5e-24 116.7 203 32.5
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 4.8e-23 112.5 80 63.8
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.4e-19 100.9 102 52.9
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 1.1e-16 91.3 47 91.5
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 1.1e-16 91.3 47 91.5
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.1e-14 84.7 82 53.7
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 3.1e-14 83.2 176 27.3
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 5.8e-13 79.0 48 75.0
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 5.8e-13 79.0 97 44.3
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.7e-12 77.4 67 55.2
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 1.7e-12 77.4 117 28.2
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 4.9e-12 75.9 55 70.9
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 2.4e-11 73.6 41 87.8
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 9.3e-11 71.6 35 97.1
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 9.3e-11 71.6 35 97.1
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 3.5e-10 69.7 62 50.0
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 4.6e-10 69.3 35 94.3
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 3.0e-09 66.6 42 71.4
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 1.5e-08 64.3 45 64.4
BcaC03g15720 Brassica carinata HOM05D000589 ORTHO05D039119 4.8e-07 59.3 34 79.4
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 1.1e-06 58.2 57 45.6


User provided reference genes

Program Settings