Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 4.3e-128 461.5 251 100.0
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 4.6e-90 335.1 252 79.4
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 2.1e-87 326.2 206 91.7
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 2.8e-87 325.9 206 91.3
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 2.1e-71 273.1 206 77.2
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 2.0e-69 266.5 209 74.6
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 5.8e-69 265.0 209 75.6
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 1.0e-68 264.2 207 78.7
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 1.1e-67 260.8 206 72.3
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 2.2e-63 246.5 206 66.5
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 6.9e-62 241.5 206 70.4
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 2.1e-58 229.9 206 68.4
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 5.0e-52 208.8 201 59.2
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 1.4e-51 207.2 201 58.2
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 1.4e-49 200.7 213 63.4
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 3.9e-49 199.1 204 55.4
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 5.1e-49 198.7 200 58.0
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 1.1e-48 197.6 200 57.5
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 2.0e-48 196.8 202 58.4
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 5.7e-48 195.3 203 55.2
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.3e-47 194.1 203 55.2
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 1.3e-47 194.1 200 56.0
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.3e-47 194.1 198 58.1
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 1.3e-47 194.1 202 56.9
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 4.8e-47 192.2 185 56.8
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 1.4e-46 190.7 173 59.0
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 2.4e-46 189.9 146 74.7
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.1e-46 189.5 198 56.6
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 5.3e-46 188.7 146 76.0
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 2.6e-45 186.4 202 54.0
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 1.3e-44 184.1 202 53.0
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 1.7e-44 183.7 201 53.2
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 2.2e-44 183.3 205 52.7
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 2.9e-44 183.0 200 53.0
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 5.0e-44 182.2 165 58.8
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 5.0e-44 182.2 186 56.5
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 5.0e-44 182.2 210 51.9
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 6.5e-44 181.8 183 55.2
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 1.1e-43 181.0 206 51.9
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 1.5e-43 180.6 164 59.1
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.5e-43 180.6 164 59.1
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 1.9e-43 180.3 196 52.0
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 2.5e-43 179.9 200 52.0
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 2.5e-43 179.9 197 52.3
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 3.2e-43 179.5 200 51.5
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 3.2e-43 179.5 207 51.7
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 3.2e-43 179.5 202 53.5
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 3.2e-43 179.5 205 55.1
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 3.2e-43 179.5 200 52.0
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 1.6e-42 177.2 201 51.7
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 3.6e-42 176.0 156 60.9
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 3.6e-42 176.0 202 52.0
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 4.7e-42 175.6 200 53.0
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 4.7e-42 175.6 201 52.7
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 8.0e-42 174.9 172 55.8
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 1.0e-41 174.5 194 53.6
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 4.0e-41 172.6 216 50.0
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 8.8e-41 171.4 202 53.0
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 8.8e-41 171.4 161 57.8
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.1e-40 171.0 211 49.3
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 1.1e-40 171.0 203 51.2
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 2.6e-40 169.9 201 52.7
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 3.3e-40 169.5 196 52.0
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 3.3e-40 169.5 161 57.1
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 7.5e-40 168.3 202 50.5
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 1.3e-39 167.5 162 58.6
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 1.3e-39 167.5 166 57.8
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 3.7e-39 166.0 158 57.0
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 1.4e-38 164.1 185 61.6
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 1.4e-38 164.1 193 50.3
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.8e-38 163.7 198 49.5
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 4.1e-38 162.5 201 49.8
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 4.1e-38 162.5 156 55.8
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 2.0e-37 160.2 202 49.0
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.7e-37 159.8 151 57.0
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 1.3e-36 157.5 157 57.3
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 2.9e-36 156.4 184 48.4
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.1e-35 154.5 155 57.4
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 5.5e-35 152.1 170 50.6
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 9.4e-35 151.4 118 67.8
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.1e-34 150.2 189 45.0
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 8.0e-34 148.3 132 63.6
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.0e-33 147.9 173 47.4
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 4.0e-33 146.0 158 53.8
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 8.8e-33 144.8 183 47.5
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.0e-32 143.7 183 48.1
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 5.7e-32 142.1 202 45.5
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 2.2e-31 140.2 167 50.9
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 1.1e-30 137.9 247 43.3
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 3.1e-30 136.3 202 45.5
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 5.4e-30 135.6 207 40.1
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 1.2e-29 134.4 204 44.1
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 3.8e-28 129.4 142 50.0
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 5.0e-28 129.0 206 50.5
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 6.5e-28 128.6 201 42.8
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 8.5e-28 128.3 148 50.0
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.2e-27 125.9 136 50.7
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 5.5e-27 125.6 164 50.0
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 9.4e-27 124.8 138 49.3
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 8.8e-25 118.2 93 71.0
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 1.5e-24 117.5 135 51.1
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 2.4e-22 110.2 122 53.3
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 2.7e-21 106.7 92 60.9
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 5.0e-20 102.4 135 50.4
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 4.3e-19 99.4 205 39.0
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 1.6e-18 97.4 165 35.2
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 1.6e-18 97.4 115 50.4
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 8.9e-17 91.7 206 37.9
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 2.0e-16 90.5 74 66.2
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 1.7e-15 87.4 80 62.5
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 9.2e-14 81.6 180 32.8
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 3.5e-13 79.7 117 53.0
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 3.0e-12 76.6 107 47.7
Thhalv10016311m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 3.9e-12 76.3 73 57.5
C04p15280 Brassica napus HOM05D000125 ORTHO05D000120 6.6e-12 75.5 71 53.5
BolC4t23100H Brassica oleracea HOM05D000125 ORTHO05D000120 6.6e-12 75.5 71 53.5
BcaC02g11458 Brassica carinata HOM05D000125 ORTHO05D000120 1.5e-11 74.3 60 58.3
C04p15320 Brassica napus HOM05D000125 ORTHO05D000120 1.5e-11 74.3 60 58.3
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.9e-11 73.9 92 48.9
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.9e-11 73.9 92 50.0
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 7.3e-11 72.0 136 33.1
BolC4t23103H Brassica oleracea HOM05D000125 ORTHO05D000120 1.6e-10 70.9 71 52.1
BcaB02g10594 Brassica carinata HOM05D000125 ORTHO05D000120 2.1e-10 70.5 71 50.7
BolC4t23105H Brassica oleracea HOM05D000125 ORTHO05D000120 3.6e-10 69.7 46 63.0
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.8e-09 67.4 92 46.7
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 3.1e-09 66.6 69 49.3
Aa31sc652G60 Aethionema arabicum HOM05D000125 ORTHO05D000120 2.0e-08 63.9 50 60.0
Aa31sc652G70 Aethionema arabicum HOM05D000125 ORTHO05D000120 2.0e-08 63.9 50 60.0
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.4e-06 57.8 127 40.2
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.2e-06 56.6 76 48.7
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 7.0e-06 55.5 75 48.0


User provided reference genes

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