Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 9.8e-88 327.0 197 100.0
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 2.9e-87 325.5 197 98.0
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 6.0e-85 317.8 210 93.8
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 8.9e-81 303.9 197 94.9
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 7.8e-77 290.8 210 89.0
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-76 289.7 204 85.8
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.4e-72 275.4 195 87.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 8.4e-71 270.8 199 86.9
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-68 263.5 199 84.9
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-67 260.4 212 81.1
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 3.3e-67 258.8 203 82.3
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 3.3e-67 258.8 203 82.3
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.4e-65 252.7 198 84.8
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 6.4e-63 244.6 216 76.4
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-62 243.4 199 80.9
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.9e-62 243.0 202 82.7
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.6e-61 238.4 202 82.7
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-60 236.5 193 81.3
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-60 235.7 193 81.3
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.1e-59 233.8 198 79.8
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-59 233.4 193 80.8
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 5.3e-57 224.9 193 79.3
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 3.0e-52 209.1 201 74.1
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.6e-51 204.9 185 76.2
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 7.1e-46 188.0 196 61.7
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 9.6e-43 177.6 201 62.2
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-42 176.0 194 54.1
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.8e-42 176.0 201 66.7
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 8.2e-42 174.5 199 65.8
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.4e-41 172.9 200 66.0
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 3.1e-41 172.6 198 61.1
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 4.5e-40 168.7 194 51.5
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 4.5e-40 168.7 194 51.5
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.0e-39 167.5 190 62.1
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.7e-39 166.8 192 66.1
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 6.5e-39 164.9 210 52.9
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.1e-38 164.1 206 59.7
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.6e-37 160.2 200 52.5
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-37 159.8 198 58.1
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 6.1e-37 158.3 200 53.5
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.0e-36 157.5 208 45.2
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-36 156.8 198 58.6
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.0e-36 156.0 202 57.9
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 3.9e-36 155.6 203 48.3
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 5.1e-36 155.2 206 46.1
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 6.7e-36 154.8 208 52.4
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 6.7e-36 154.8 208 44.7
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 8.7e-36 154.5 205 49.8
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-35 154.1 194 49.0
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-35 154.1 194 49.0
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-35 154.1 194 49.0
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 2.5e-35 152.9 198 58.1
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.3e-35 152.5 198 52.5
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 3.3e-35 152.5 225 50.7
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 5.7e-35 151.8 203 61.1
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.3e-34 150.6 208 44.7
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.6e-34 150.2 206 51.9
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-34 149.4 166 54.2
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 6.3e-34 148.3 198 56.6
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.4e-33 147.1 200 57.5
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.4e-33 146.4 209 48.8
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 3.1e-33 146.0 205 55.1
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 3.1e-33 146.0 163 62.0
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 4.1e-33 145.6 202 50.0
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.3e-33 145.2 201 51.2
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 6.9e-33 144.8 216 57.9
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.5e-32 143.7 148 56.8
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 2.6e-32 142.9 203 55.7
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 5.9e-32 141.7 143 62.9
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 5.9e-32 141.7 202 47.5
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 7.7e-32 141.4 205 53.7
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 7.7e-32 141.4 205 53.7
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.0e-31 141.0 205 49.3
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.0e-31 141.0 201 39.8
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.0e-31 141.0 212 43.4
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.3e-31 140.6 200 53.5
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.7e-31 140.2 201 54.7
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.7e-31 140.2 148 51.4
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.2e-31 139.8 203 54.2
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.2e-31 139.8 201 58.7
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 5.0e-31 138.7 211 46.4
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 6.5e-31 138.3 213 49.8
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 6.5e-31 138.3 218 48.6
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 8.5e-31 137.9 205 54.1
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.4e-30 137.1 212 50.9
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.4e-30 137.1 205 47.8
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.9e-30 136.7 201 55.7
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.9e-30 136.7 202 48.5
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.2e-30 136.0 199 50.8
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 5.5e-30 135.2 219 54.8
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.2e-29 134.0 194 50.5
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.6e-29 133.7 220 53.6
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 2.1e-29 133.3 208 50.5
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 4.6e-29 132.1 153 56.9
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.1e-29 131.7 194 43.3
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 6.1e-29 131.7 214 48.6
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 7.9e-29 131.3 212 39.2
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.0e-28 131.0 245 48.6
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.0e-28 131.0 187 44.9
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.8e-28 130.2 200 42.5
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.8e-28 130.2 193 59.1
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.8e-28 130.2 230 51.3
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 1.8e-28 130.2 205 57.1
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.0e-28 129.4 197 57.9
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.0e-28 129.4 195 56.9
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 3.0e-28 129.4 198 41.4
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 3.9e-28 129.0 226 46.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.9e-28 129.0 210 40.0
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.5e-27 127.1 215 45.6
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.5e-27 127.1 201 43.3
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.5e-27 127.1 230 39.1
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 2.0e-27 126.7 191 44.0
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.5e-27 126.3 146 47.3
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.5e-27 126.3 211 42.7
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.5e-27 126.3 207 50.2
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.5e-27 126.3 190 52.1
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 2.5e-27 126.3 210 54.3
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 3.3e-27 125.9 208 44.7
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 5.7e-27 125.2 208 36.5
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 9.7e-27 124.4 203 53.7
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 9.7e-27 124.4 219 50.7
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.3e-26 124.0 194 52.1
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.7e-26 123.6 193 54.9
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 2.2e-26 123.2 163 44.8
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.8e-26 122.9 207 50.2
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.8e-26 122.9 232 50.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 4.8e-26 122.1 140 69.3
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 6.3e-26 121.7 199 56.3
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.1e-25 120.9 199 56.8
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.1e-25 120.9 199 56.3
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.4e-25 120.6 210 49.5
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.4e-25 120.6 196 47.4
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.4e-25 120.6 198 48.5
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 2.4e-25 119.8 213 50.7
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.4e-25 119.8 198 42.9
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.4e-25 119.8 186 40.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 3.1e-25 119.4 196 54.6
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 6.9e-25 118.2 203 55.7
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 6.9e-25 118.2 143 66.4
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.6e-24 116.3 165 58.8
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.6e-24 116.3 165 57.0
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 2.6e-24 116.3 165 58.8
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.6e-24 116.3 165 57.0
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.4e-24 115.9 206 36.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.7e-24 114.8 249 47.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.2e-23 113.2 182 41.8
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.2e-23 113.2 154 63.0
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 2.2e-23 113.2 152 41.4
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.9e-23 112.8 140 58.6
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.5e-22 109.8 246 45.9
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 4.7e-21 105.5 237 41.4
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.0e-20 104.4 248 35.1
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 3.9e-20 102.4 184 39.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 6.7e-20 101.7 195 40.0
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 8.8e-20 101.3 193 36.3
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 2.6e-19 99.8 195 42.6
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 7.4e-19 98.2 149 57.7
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.4e-17 94.0 214 38.3
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 7.0e-17 91.7 113 72.6
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 5.9e-16 88.6 195 33.3
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 5.9e-16 88.6 211 30.3
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.7e-16 88.2 227 30.4
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.0e-15 85.5 232 33.6
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 7.2e-14 81.6 135 40.7
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-13 80.1 41 82.9
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.6e-13 79.3 236 28.0
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 3.9e-12 75.9 91 42.9
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 5.2e-12 75.5 202 44.1
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-11 74.3 202 43.1
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.3e-11 72.8 202 43.1
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.3e-11 72.8 123 40.7
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.7e-11 72.0 189 28.6
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.0e-08 63.5 143 28.7
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 1.7e-07 60.5 67 46.3
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 1.7e-07 60.5 42 59.5
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 1.5e-06 57.4 45 53.3
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 1.9e-06 57.0 45 57.8
Pp3c17_5610 Physcomitrium patens HOM05D022619 ORTHO05D026045 4.2e-06 55.8 49 44.9
SMO347G0423 Selaginella moellendorffii HOM05D013579 ORTHO05D004077 4.2e-06 55.8 47 53.2
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 7.2e-06 55.1 97 36.1


User provided reference genes

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