Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 9.2e-37 156.8 103 100.0
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 9.2e-37 156.8 103 100.0
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 9.2e-37 156.8 103 100.0
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 1.1e-29 133.3 103 89.3
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 3.5e-28 128.3 105 71.4
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.7e-27 125.9 106 70.8
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.1e-26 123.2 103 65.0
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 5.6e-26 120.9 103 64.1
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.2e-25 119.8 103 85.4
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 2.1e-25 119.0 105 67.6
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 2.1e-25 119.0 105 67.6
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 2.8e-25 118.6 103 64.1
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 8.1e-25 117.1 104 66.3
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.4e-24 116.3 103 64.1
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 3.1e-24 115.2 103 62.1
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 5.2e-24 114.4 103 75.7
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 8.9e-24 113.6 103 58.3
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 8.9e-24 113.6 104 80.8
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 7.6e-23 110.5 103 59.2
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 9.9e-23 110.2 103 74.8
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 2.2e-22 109.0 103 60.2
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 4.2e-21 104.8 103 74.8
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 4.2e-21 104.8 103 74.8
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 1.6e-20 102.8 102 73.5
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 3.3e-18 95.1 103 49.5
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 3.6e-17 91.7 54 85.2
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 3.6e-17 91.7 54 85.2
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 3.6e-17 91.7 54 85.2
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 4.0e-16 88.2 54 72.2
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 4.4e-15 84.7 54 66.7
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 5.8e-15 84.3 94 46.8
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 9.9e-15 83.6 54 66.7
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 1.7e-14 82.8 54 68.5
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 3.8e-14 81.6 55 69.1
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 4.9e-14 81.3 54 66.7
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 6.4e-14 80.9 103 41.7
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 8.4e-14 80.5 54 64.8
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 8.4e-14 80.5 54 63.0
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 1.1e-13 80.1 93 45.2
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 2.4e-13 79.0 54 61.1
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.4e-13 79.0 54 64.8
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 2.4e-13 79.0 54 66.7
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 3.2e-13 78.6 55 67.3
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 3.2e-13 78.6 54 61.1
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 4.2e-13 78.2 54 63.0
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.2e-12 76.6 54 61.1
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 1.2e-12 76.6 54 63.0
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.6e-12 76.3 54 64.8
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.7e-12 75.5 54 61.1
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 2.7e-12 75.5 54 63.0
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 3.5e-12 75.1 54 61.1
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.5e-12 75.1 55 63.6
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 4.6e-12 74.7 54 61.1
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 4.6e-12 74.7 54 57.4
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 6.0e-12 74.3 54 59.3
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 7.8e-12 73.9 54 57.4
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 7.8e-12 73.9 55 61.8
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 7.8e-12 73.9 55 61.8
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.0e-11 73.6 54 59.3
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.0e-11 73.6 54 59.3
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 1.0e-11 73.6 51 58.8
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.3e-11 73.2 54 57.4
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.3e-11 73.2 55 60.0
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.3e-11 73.2 54 59.3
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.7e-11 72.8 55 58.2
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.7e-11 72.8 55 58.2
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 2.3e-11 72.4 54 59.3
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 3.0e-11 72.0 54 61.1
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 3.0e-11 72.0 54 59.3
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 3.9e-11 71.6 54 55.6
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 6.6e-11 70.9 52 59.6
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 6.6e-11 70.9 54 55.6
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 8.7e-11 70.5 54 55.6
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 1.5e-10 69.7 53 60.4
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 2.5e-10 68.9 54 53.7
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 3.3e-10 68.6 53 54.7
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 4.3e-10 68.2 54 51.9
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 4.3e-10 68.2 96 37.5
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 9.6e-10 67.0 54 55.6
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 9.6e-10 67.0 54 55.6
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 1.3e-09 66.6 58 63.8
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 2.1e-09 65.9 54 59.3
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.1e-09 65.9 58 60.3
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 2.8e-09 65.5 58 62.1
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.6e-09 65.1 49 61.2
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 4.8e-09 64.7 54 55.6
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 4.8e-09 64.7 55 52.7
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 8.1e-09 63.9 57 54.4
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 8.1e-09 63.9 57 59.6
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.4e-08 63.2 52 50.0
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 1.4e-08 63.2 53 52.8
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 1.4e-08 63.2 54 53.7
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 1.8e-08 62.8 54 50.0
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 2.4e-08 62.4 55 56.4
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 3.1e-08 62.0 54 53.7
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 5.3e-08 61.2 56 55.4
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 6.9e-08 60.8 54 50.0
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 6.9e-08 60.8 54 51.9
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 9.0e-08 60.5 77 41.6
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 9.0e-08 60.5 54 53.7
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 9.0e-08 60.5 54 53.7
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 1.2e-07 60.1 41 63.4
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.0e-07 59.3 55 52.7
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.0e-07 59.3 55 52.7
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 2.0e-07 59.3 55 52.7
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 2.0e-07 59.3 56 51.8
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 2.6e-07 58.9 54 53.7
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 7.6e-07 57.4 54 51.9
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 7.6e-07 57.4 46 56.5
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 1.3e-06 56.6 54 55.6
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.7e-06 56.2 54 44.4
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 2.2e-06 55.8 39 61.5
Migut.G00489 Erythranthe guttata HOM05D005475 ORTHO05D006575 3.8e-06 55.1 55 49.1
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 6.4e-06 54.3 62 45.2


User provided reference genes

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