Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 7.7e-84 313.9 177 100.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 1.0e-75 287.0 177 87.6
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 2.9e-54 215.7 172 72.1
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 5.6e-50 201.4 191 67.5
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 9.6e-50 200.7 192 63.0
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 2.8e-49 199.1 203 68.0
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 8.4e-46 187.6 163 67.5
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 6.6e-43 177.9 197 59.9
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 1.1e-42 177.2 191 56.5
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 1.1e-42 177.2 191 57.1
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.5e-42 176.8 185 59.5
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.9e-42 176.4 197 56.9
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.3e-42 175.6 191 55.5
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 8.1e-41 171.0 193 55.4
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 5.3e-40 168.3 199 59.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 2.6e-39 166.0 192 55.2
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 5.8e-39 164.9 197 54.8
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 4.9e-38 161.8 197 56.3
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.5e-31 140.2 164 49.4
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.4e-31 139.0 121 62.8
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 2.1e-28 129.8 162 46.3
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 2.1e-25 119.8 163 41.1
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 2.8e-25 119.4 165 41.8
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.1e-24 117.5 165 41.8
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 2.4e-24 116.3 176 41.5
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 3.1e-24 115.9 165 43.0
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 4.0e-24 115.5 175 41.1
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 4.0e-24 115.5 175 41.1
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.9e-24 114.8 101 62.4
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 6.9e-24 114.8 176 40.9
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 2.6e-23 112.8 164 42.7
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 3.4e-23 112.5 165 41.8
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.5e-23 112.1 128 53.9
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 4.5e-23 112.1 165 38.8
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.3e-22 110.5 176 40.9
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 2.9e-22 109.4 163 40.5
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 3.8e-22 109.0 177 40.1
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 3.8e-22 109.0 177 40.1
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 4.9e-22 108.6 176 39.2
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 6.5e-22 108.2 177 39.0
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 6.5e-22 108.2 176 38.6
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.9e-21 106.7 177 39.0
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 4.2e-21 105.5 65 86.2
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 4.2e-21 105.5 65 86.2
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 5.5e-21 105.1 163 38.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 7.1e-21 104.8 163 41.1
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 7.1e-21 104.8 163 38.7
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 7.1e-21 104.8 165 37.6
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 7.1e-21 104.8 161 41.0
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 7.1e-21 104.8 162 40.7
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 9.3e-21 104.4 176 38.6
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.2e-20 104.0 163 38.0
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 1.6e-20 103.6 176 38.1
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 2.1e-20 103.2 163 39.3
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 2.1e-20 103.2 164 39.6
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.1e-20 103.2 163 39.9
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 2.7e-20 102.8 163 38.0
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.0e-20 101.7 85 67.1
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.0e-20 101.7 85 67.1
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 6.0e-20 101.7 163 38.0
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 6.0e-20 101.7 165 40.0
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 7.9e-20 101.3 163 39.9
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 7.9e-20 101.3 164 38.4
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.0e-19 100.9 176 37.5
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.0e-19 100.9 164 39.0
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 1.8e-19 100.1 163 39.3
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.8e-19 100.1 164 39.0
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 2.3e-19 99.8 165 37.0
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 2.3e-19 99.8 164 37.8
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 3.0e-19 99.4 164 37.2
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 3.0e-19 99.4 167 36.5
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 3.9e-19 99.0 175 37.1
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 5.1e-19 98.6 176 35.8
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 5.1e-19 98.6 163 38.7
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 6.7e-19 98.2 162 37.7
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 6.7e-19 98.2 167 37.1
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.1e-18 97.4 164 39.6
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.5e-18 97.1 163 37.4
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.9e-18 96.7 178 36.5
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.9e-18 96.7 180 37.2
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.9e-18 96.7 166 38.0
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 2.5e-18 96.3 164 36.0
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 3.3e-18 95.9 170 35.9
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 3.3e-18 95.9 165 37.6
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 3.3e-18 95.9 164 34.8
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 4.3e-18 95.5 165 38.8
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 5.7e-18 95.1 165 37.6
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.7e-18 95.1 178 36.5
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 9.6e-18 94.4 125 44.0
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.1e-17 93.2 178 36.0
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 2.8e-17 92.8 177 36.2
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.8e-17 92.8 176 35.2
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 3.7e-17 92.4 176 34.7
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 3.7e-17 92.4 188 34.0
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 6.2e-17 91.7 197 33.5
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 6.2e-17 91.7 167 34.7
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 8.2e-17 91.3 178 35.4
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.4e-16 90.5 188 34.6
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.4e-16 90.5 164 34.1
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.8e-16 90.1 161 37.9
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 1.8e-16 90.1 163 34.4
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.8e-16 90.1 163 35.0
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.2e-15 87.4 178 32.0
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 3.4e-15 85.9 201 31.8
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 4.5e-15 85.5 165 33.9
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 2.2e-14 83.2 116 38.8
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.9e-13 80.1 204 31.4
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 2.5e-13 79.7 204 31.4
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 2.5e-13 79.7 127 39.4
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 7.2e-13 78.2 165 32.1
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 9.3e-13 77.8 154 31.8
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 2.1e-12 76.6 223 30.0
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 2.3e-11 73.2 163 31.3
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 5.1e-11 72.0 115 36.5
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 1.3e-09 67.4 76 46.1
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-09 67.0 66 56.1
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.2e-09 66.6 66 54.5
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 3.7e-09 65.9 161 27.3
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 6.3e-09 65.1 177 31.6
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 5.3e-08 62.0 72 44.4
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 2.0e-07 60.1 129 33.3
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 2.6e-07 59.7 134 34.3
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 7.7e-07 58.2 110 32.7


User provided reference genes

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