Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 3.0e-151 538.5 273 100.0
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 3.0e-151 538.5 273 100.0
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 2.5e-142 508.8 268 96.6
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 2.5e-142 508.8 268 96.6
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 6.4e-138 494.2 278 91.4
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 4.6e-136 488.0 279 90.0
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 6.0e-136 487.6 279 90.3
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 2.5e-134 482.3 276 89.5
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 7.4e-134 480.7 240 99.2
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 1.1e-132 476.9 240 97.9
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 2.9e-130 468.8 277 87.0
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 4.9e-130 468.0 271 86.7
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 8.4e-130 467.2 271 86.3
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 3.2e-129 465.3 271 86.3
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 3.2e-129 465.3 271 86.3
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 4.2e-129 464.9 277 85.6
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 1.2e-128 463.4 240 94.2
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 6.7e-127 457.6 265 86.4
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.9e-126 456.1 240 93.8
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 4.2e-121 438.3 257 85.2
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 2.1e-120 436.0 240 89.6
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 2.1e-120 436.0 276 80.8
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 3.6e-120 435.3 275 80.7
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 3.6e-120 435.3 258 83.3
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 3.6e-120 435.3 279 80.3
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 7.9e-120 434.1 268 80.6
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 3.9e-119 431.8 262 82.1
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 6.7e-119 431.0 262 82.1
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 2.0e-118 429.5 268 79.5
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 5.7e-118 427.9 288 77.4
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 7.4e-118 427.6 250 83.6
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 7.4e-118 427.6 270 79.3
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 7.4e-118 427.6 273 78.4
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 9.7e-118 427.2 267 81.6
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 9.7e-118 427.2 273 78.8
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 9.7e-118 427.2 268 80.6
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.7e-117 426.4 278 79.1
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 2.2e-117 426.0 263 79.1
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 2.2e-117 426.0 252 83.3
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-117 425.6 267 81.6
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 2.8e-117 425.6 268 80.2
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.8e-117 425.6 268 80.2
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.8e-117 425.6 268 80.2
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 3.7e-117 425.2 253 83.0
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 8.2e-117 424.1 267 80.5
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 1.1e-116 423.7 280 77.1
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.8e-116 422.9 268 79.5
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 2.4e-116 422.5 272 79.0
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 3.1e-116 422.2 251 82.9
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 4.1e-116 421.8 237 85.2
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 4.1e-116 421.8 238 85.3
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 5.3e-116 421.4 247 83.0
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.9e-116 421.0 275 78.2
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 9.1e-116 420.6 267 78.7
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 3.4e-115 418.7 239 84.5
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 4.5e-115 418.3 280 75.7
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 5.9e-115 417.9 267 79.4
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 7.7e-115 417.5 237 84.8
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.7e-114 416.4 238 83.2
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.7e-114 416.4 235 85.1
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.7e-114 416.4 257 79.8
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 2.2e-114 416.0 280 75.7
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 2.2e-114 416.0 272 78.7
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 2.2e-114 416.0 270 78.9
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.2e-114 416.0 241 84.2
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 2.9e-114 415.6 246 83.7
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.8e-114 415.2 265 80.0
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 1.1e-113 413.7 273 76.9
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 4.2e-113 411.8 233 83.7
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 4.2e-113 411.8 277 76.2
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 7.2e-113 411.0 275 74.9
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 4.7e-112 408.3 270 76.3
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 6.1e-112 407.9 233 82.4
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 1.0e-111 407.1 267 75.7
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.8e-111 406.4 245 79.2
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 2.3e-111 406.0 283 73.5
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.3e-111 406.0 273 73.6
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 3.9e-111 405.2 244 77.9
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.5e-110 403.3 268 76.5
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 2.0e-110 402.9 239 80.8
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.6e-110 402.5 276 75.0
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 9.7e-110 400.6 272 75.0
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 1.3e-109 400.2 265 75.5
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.7e-109 399.8 246 80.1
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 4.8e-109 398.3 275 73.5
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 6.3e-109 397.9 243 79.4
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 2.4e-108 396.0 221 86.4
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 2.4e-108 396.0 264 75.0
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 4.1e-108 395.2 262 74.8
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 7.0e-108 394.4 294 72.1
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.5e-107 393.3 249 77.5
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 2.6e-107 392.5 238 77.7
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 5.9e-107 391.3 238 78.6
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.0e-106 390.6 247 77.3
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 3.8e-106 388.7 246 77.2
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.5e-105 384.8 273 71.1
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.2e-104 383.6 261 73.2
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 1.2e-104 383.6 249 75.1
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 2.1e-104 382.9 237 75.5
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 8.0e-104 380.9 276 68.8
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 2.3e-103 379.4 277 69.7
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.7e-101 373.2 238 76.5
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.8e-101 372.5 225 79.1
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.7e-101 372.1 391 54.5
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 4.8e-101 371.7 256 72.3
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.1e-100 370.5 222 78.8
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 6.1e-96 354.8 260 68.5
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 1.2e-94 350.5 261 67.8
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 1.8e-92 343.2 267 65.9
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 2.4e-92 342.8 225 73.8
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.3e-92 341.7 242 70.2
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 3.2e-89 332.4 239 67.4
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 1.8e-87 326.6 188 84.6
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 3.0e-87 325.9 241 64.7
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 4.0e-87 325.5 268 62.3
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 2.3e-82 309.7 175 86.9
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.8e-79 300.1 235 62.1
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 3.4e-78 295.8 238 59.7
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 7.0e-76 288.1 174 78.7
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 2.7e-75 286.2 280 56.1
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 5.9e-75 285.0 247 61.1
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 1.3e-74 283.9 223 65.0
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.5e-73 280.4 179 74.3
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 6.0e-67 258.5 221 59.3
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 3.3e-65 252.7 282 52.5
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 7.5e-62 241.5 253 52.6
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.3e-58 229.9 157 76.4
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.3e-57 225.7 171 63.2
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 5.2e-55 218.8 135 80.7
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 2.2e-53 213.4 261 48.3
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 1.9e-52 210.3 124 83.1
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 6.6e-50 201.8 230 43.9
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.4e-47 194.1 106 83.0
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.6e-46 189.9 124 75.0
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 6.0e-43 178.7 221 43.0
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.3e-42 176.8 219 43.4
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 3.8e-37 159.5 115 71.3
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 6.6e-34 148.7 87 77.0
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.5e-33 147.5 87 79.3
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-32 143.3 135 60.0
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 5.3e-31 139.0 157 52.2
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.1e-25 121.3 254 32.3
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.1e-24 117.1 88 71.6
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 4.0e-23 112.8 85 63.5
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.3e-21 107.8 64 75.0
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.4e-15 87.8 86 53.5
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 4.5e-14 82.8 166 39.8
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.0e-13 81.6 46 80.4
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.1e-09 68.2 248 26.2
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 4.3e-09 66.2 230 27.4
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 5.7e-09 65.9 70 52.9
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.3e-08 64.7 68 54.4
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 4.8e-08 62.8 237 25.7
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 1.1e-07 61.6 232 25.0
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 3.1e-07 60.1 28 96.4
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 4.1e-07 59.7 232 24.6
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 1.2e-06 58.2 206 29.6


User provided reference genes

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