Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 2.6e-289 998.0 524 100.0
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 8.6e-232 807.0 498 89.4
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 5.2e-221 771.2 407 100.0
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 5.1e-216 754.6 461 90.0
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 3.0e-184 649.0 489 77.1
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 1.8e-181 639.8 485 75.7
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 5.5e-178 628.2 472 79.2
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 2.8e-174 615.9 492 72.6
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.2e-172 610.5 479 73.9
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.5e-172 610.1 481 75.3
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 7.2e-162 574.7 468 70.3
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 4.8e-150 535.4 485 65.4
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 4.8e-150 535.4 485 65.4
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 3.5e-148 529.3 487 65.5
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 1.3e-147 527.3 486 65.2
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 4.2e-146 522.3 482 65.4
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 6.1e-137 491.9 473 64.5
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 9.8e-135 484.6 466 63.1
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 2.9e-134 483.0 463 63.1
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 5.4e-133 478.8 468 64.3
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 4.0e-112 409.5 496 53.8
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.4e-109 401.0 494 55.3
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 1.2e-108 397.9 477 56.2
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.6e-108 397.5 475 57.1
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.5e-106 390.2 496 54.0
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 7.6e-103 378.6 480 53.5
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 9.9e-103 378.3 481 54.9
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.6e-100 370.9 482 55.2
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 2.7e-100 370.2 480 55.0
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 8.7e-99 365.2 480 54.6
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 2.5e-98 363.6 476 53.6
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 2.8e-97 360.1 476 53.4
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 1.0e-91 341.7 499 49.1
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 3.6e-28 130.6 532 30.5
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 1.2e-26 125.6 502 29.7
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 2.7e-23 114.4 412 28.9
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 9.5e-21 105.9 262 32.4
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 9.5e-21 105.9 519 27.7
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 2.1e-20 104.8 388 29.6
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 9.8e-18 95.9 441 26.1
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 2.4e-16 91.3 486 27.8
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 7.8e-15 86.3 299 28.4
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 7.8e-15 86.3 420 28.6
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 1.0e-14 85.9 313 25.9
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 1.0e-14 85.9 474 26.2
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.7e-14 85.1 313 25.6
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 3.9e-14 84.0 432 28.0
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 2.5e-13 81.3 340 27.6
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 1.6e-12 78.6 206 32.0
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 5.2e-11 73.6 267 29.2
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 1.3e-09 68.9 95 46.3
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 4.9e-09 67.0 485 25.8
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 4.9e-09 67.0 203 29.1
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 6.0e-07 60.1 438 25.1
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 1.0e-06 59.3 263 25.5
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 1.3e-06 58.9 431 24.6
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 2.3e-06 58.2 598 23.7
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 3.0e-06 57.8 191 26.2
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 3.9e-06 57.4 241 29.0


User provided reference genes

Program Settings