Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 8.5e-51 203.4 102 100.0
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 4.1e-45 184.5 120 82.5
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 4.1e-45 184.5 120 82.5
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 2.5e-26 122.1 100 67.0
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 9.5e-26 120.2 69 89.9
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 9.5e-26 120.2 69 89.9
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 9.5e-26 120.2 69 89.9
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 6.1e-25 117.5 69 88.4
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 8.9e-24 113.6 69 87.0
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 1.2e-23 113.2 70 88.6
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 1.2e-23 113.2 70 88.6
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 2.0e-23 112.5 69 85.5
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 5.7e-23 110.9 69 84.1
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 7.5e-23 110.5 69 84.1
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 1.3e-22 109.8 69 82.6
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 1.1e-21 106.7 114 56.1
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 1.1e-21 106.7 114 56.1
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 2.0e-20 102.4 69 76.8
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 1.2e-17 93.2 110 49.1
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 1.0e-16 90.1 96 53.1
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 1.8e-16 89.4 69 66.7
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 2.3e-16 89.0 67 67.2
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 2.3e-16 89.0 69 66.7
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 5.2e-16 87.8 99 51.5
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 5.2e-16 87.8 69 66.7
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 6.8e-16 87.4 69 66.7
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 6.8e-16 87.4 69 66.7
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 8.9e-16 87.0 69 66.7
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 2.0e-15 85.9 69 65.2
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 2.6e-15 85.5 69 63.8
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 2.6e-15 85.5 69 63.8
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 3.4e-15 85.1 69 63.8
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 3.4e-15 85.1 69 63.8
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 3.4e-15 85.1 69 63.8
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 4.4e-15 84.7 68 66.2
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 5.8e-15 84.3 71 63.4
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 7.5e-15 84.0 113 46.0
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 9.8e-15 83.6 94 53.2
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 9.8e-15 83.6 69 62.3
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 1.3e-14 83.2 71 63.4
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 1.3e-14 83.2 69 62.3
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 1.3e-14 83.2 67 64.2
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 1.7e-14 82.8 69 62.3
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 2.2e-14 82.4 69 62.3
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 2.9e-14 82.0 69 63.8
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 2.9e-14 82.0 69 60.9
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 2.9e-14 82.0 69 60.9
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 4.9e-14 81.3 67 62.7
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 4.9e-14 81.3 79 59.5
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 8.3e-14 80.5 69 62.3
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 8.3e-14 80.5 67 64.2
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 1.1e-13 80.1 69 58.0
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 1.4e-13 79.7 94 53.2
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 1.8e-13 79.3 67 62.7
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 2.4e-13 79.0 96 49.0
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 2.4e-13 79.0 69 62.3
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.4e-13 79.0 67 61.2
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 3.2e-13 78.6 67 64.2
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 4.1e-13 78.2 67 62.7
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 4.1e-13 78.2 71 60.6
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 4.1e-13 78.2 67 58.2
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 4.1e-13 78.2 94 51.1
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 5.4e-13 77.8 67 56.7
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 5.4e-13 77.8 101 47.5
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 5.4e-13 77.8 69 58.0
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 7.0e-13 77.4 67 55.2
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 7.0e-13 77.4 67 62.7
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 9.2e-13 77.0 71 60.6
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 1.2e-12 76.6 71 60.6
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 1.6e-12 76.3 67 59.7
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.0e-12 75.9 54 64.8
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 2.0e-12 75.9 69 60.9
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 3.5e-12 75.1 69 56.5
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 3.5e-12 75.1 69 55.1
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 4.6e-12 74.7 93 51.6
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 4.6e-12 74.7 67 56.7
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 6.0e-12 74.3 69 59.4
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 7.8e-12 73.9 71 54.9
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 7.8e-12 73.9 69 60.9
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 1.0e-11 73.6 54 63.0
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 1.3e-11 73.2 69 59.4
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.3e-11 73.2 69 53.6
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.3e-11 73.2 69 59.4
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 2.3e-11 72.4 69 60.9
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 3.9e-11 71.6 67 56.7
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 3.9e-11 71.6 67 53.7
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 5.0e-11 71.2 65 56.9
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 8.6e-11 70.5 69 56.5
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 1.1e-10 70.1 72 51.4
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 1.5e-10 69.7 51 62.7
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 1.5e-10 69.7 67 55.2
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 1.5e-10 69.7 80 43.8
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 2.5e-10 68.9 54 61.1
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 9.5e-10 67.0 69 49.3
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 2.1e-09 65.9 69 47.8
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.8e-09 65.5 57 63.2
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 4.7e-09 64.7 72 50.0
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 2.2e-06 55.8 66 40.9


User provided reference genes

Program Settings