Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.6e-104 382.1 201 100.0
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 3.4e-104 381.7 201 99.5
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 6.3e-98 360.9 201 95.0
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 4.7e-93 344.7 235 81.3
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.8e-89 332.8 202 88.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 4.1e-89 331.6 201 87.1
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 3.9e-84 315.1 201 83.1
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 2.6e-83 312.4 201 82.6
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 5.9e-80 301.2 201 81.1
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 2.3e-76 289.3 200 80.5
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 5.9e-56 221.5 236 58.5
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.5e-43 180.3 191 57.1
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 6.4e-42 174.9 194 52.6
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.7e-40 169.5 160 60.0
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.9e-39 165.6 205 50.2
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.9e-39 165.6 179 56.4
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.5e-38 163.7 199 50.8
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.5e-38 163.7 199 48.7
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.5e-38 163.7 164 55.5
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.9e-38 163.3 162 55.6
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.5e-38 162.9 168 56.5
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 3.3e-38 162.5 149 60.4
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 3.3e-38 162.5 206 49.0
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 9.5e-38 161.0 160 56.2
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.6e-37 160.2 157 58.0
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.6e-37 159.1 203 47.3
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.6e-37 159.1 161 57.1
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 4.7e-37 158.7 202 48.0
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 4.7e-37 158.7 179 54.7
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 8.1e-37 157.9 177 56.5
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 8.1e-37 157.9 220 45.0
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.4e-36 157.1 176 52.8
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 3.1e-36 156.0 165 55.8
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.1e-36 156.0 150 58.0
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.1e-36 156.0 150 58.0
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 5.2e-36 155.2 158 56.3
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 5.2e-36 155.2 205 47.8
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.2e-35 154.1 193 48.7
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 9.9e-35 151.0 177 50.3
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.3e-34 150.6 143 57.3
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.3e-34 150.6 141 56.7
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 2.9e-34 149.4 141 57.4
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 2.9e-34 149.4 184 49.5
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.9e-34 148.7 149 56.4
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 8.3e-34 147.9 154 52.6
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.4e-33 147.1 148 56.1
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.4e-33 147.1 200 45.0
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.4e-33 147.1 164 50.6
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.2e-33 146.0 172 47.7
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 3.2e-33 146.0 144 56.2
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 3.2e-33 146.0 135 56.3
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.1e-33 145.6 186 47.8
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.4e-33 145.2 192 47.4
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 7.1e-33 144.8 137 55.5
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 9.2e-33 144.4 195 45.1
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.7e-32 142.9 144 54.2
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 2.7e-32 142.9 146 53.4
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.3e-31 140.6 164 48.8
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.0e-31 139.4 152 52.6
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 3.9e-31 139.0 152 51.3
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 6.6e-31 138.3 138 53.6
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 8.6e-31 137.9 164 48.2
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 2.5e-30 136.3 222 40.5
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.6e-30 135.2 159 49.1
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.7e-29 132.1 160 48.8
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.1e-28 131.0 157 47.8
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.8e-28 130.2 147 50.3
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 2.4e-28 129.8 163 47.2
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 5.2e-28 128.6 175 44.6
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 5.2e-28 128.6 200 40.5
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.4e-27 125.9 151 51.7
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 2.2e-26 123.2 135 48.1
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.9e-25 120.2 191 39.3
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.9e-25 120.2 134 49.3
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 2.4e-25 119.8 97 67.0
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 2.1e-24 116.7 244 36.1
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 6.0e-24 115.2 133 48.1
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 3.3e-22 109.4 152 42.1
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 1.2e-21 107.5 152 42.8
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.6e-21 107.1 154 38.3
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 4.7e-21 105.5 160 41.9
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 8.1e-21 104.8 149 42.3
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.1e-20 104.4 162 36.4
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.4e-20 104.0 195 35.9
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.8e-20 103.6 154 38.3
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.1e-20 102.8 123 41.5
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 3.1e-20 102.8 148 41.2
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 4.0e-20 102.4 196 38.3
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.3e-20 102.1 141 37.6
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 5.3e-20 102.1 154 37.0
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 6.9e-20 101.7 190 33.7
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 9.0e-20 101.3 124 41.1
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 2.0e-19 100.1 153 38.6
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.0e-19 100.1 164 39.0
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 4.4e-19 99.0 164 38.4
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 5.8e-19 98.6 165 30.9
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 5.8e-19 98.6 153 38.6
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 7.6e-19 98.2 154 35.7
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 7.6e-19 98.2 153 37.3
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 9.9e-19 97.8 144 38.9
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 9.9e-19 97.8 125 40.8
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.7e-18 97.1 147 41.5
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.7e-18 97.1 154 35.7
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.7e-18 97.1 181 33.7
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 2.2e-18 96.7 126 41.3
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.9e-18 96.3 126 39.7
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 4.9e-18 95.5 151 38.4
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 4.9e-18 95.5 154 38.3
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 8.4e-18 94.7 140 34.3
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.1e-17 94.4 161 32.9
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.1e-17 94.4 156 35.9
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.1e-17 94.4 143 37.8
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 1.4e-17 94.0 141 38.3
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.4e-17 94.0 161 32.9
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 3.2e-17 92.8 161 32.3
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 4.2e-17 92.4 160 35.6
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 4.2e-17 92.4 166 31.9
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 4.2e-17 92.4 147 34.7
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 4.2e-17 92.4 163 33.1
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 5.4e-17 92.0 149 36.2
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.2e-16 90.9 148 36.5
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.6e-16 90.5 130 39.2
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.6e-16 90.5 175 33.7
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.6e-16 90.5 154 37.0
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 2.1e-16 90.1 125 37.6
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 2.7e-16 89.7 196 30.6
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.7e-16 89.7 154 34.4
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 3.5e-16 89.4 168 32.7
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 3.5e-16 89.4 205 31.2
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 7.8e-16 88.2 115 40.9
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.7e-15 87.0 73 58.9
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 3.9e-15 85.9 160 31.9
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 8.7e-15 84.7 179 31.3
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.9e-14 83.6 199 30.7
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.5e-14 83.2 122 36.1
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 4.3e-14 82.4 160 32.5
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 4.3e-14 82.4 138 31.9
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 7.3e-14 81.6 138 33.3
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 9.6e-14 81.3 144 29.9
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 3.6e-13 79.3 86 47.7
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.8e-13 79.0 127 44.9
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 6.2e-13 78.6 93 41.9
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-12 77.8 142 30.3
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 1.1e-12 77.8 116 36.2
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.4e-12 77.4 127 44.1
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 4.0e-12 75.9 76 56.6
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 4.0e-12 75.9 159 32.7
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 6.9e-12 75.1 166 33.7
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 6.9e-12 75.1 179 29.1
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.6e-11 73.2 126 36.5
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.6e-11 73.2 75 50.7
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 5.8e-11 72.0 170 28.8
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.3e-10 70.9 87 39.1
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.3e-10 70.9 87 39.1
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 1.7e-10 70.5 74 50.0
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 2.2e-10 70.1 96 42.7
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 3.8e-10 69.3 86 39.5
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 8.4e-10 68.2 64 54.7
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 1.4e-09 67.4 164 27.4
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 5.4e-09 65.5 158 27.2
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 9.3e-09 64.7 150 32.0
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.7e-08 63.2 70 50.0
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.8e-07 60.5 72 40.3


User provided reference genes

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