Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 3.3e-173 611.7 325 100.0
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 9.0e-171 603.6 325 98.8
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 9.9e-170 600.1 325 96.0
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 9.9e-170 600.1 325 96.0
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.4e-168 596.3 326 98.2
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 5.5e-160 567.8 326 93.3
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 4.3e-157 558.1 325 88.9
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 3.2e-152 542.0 325 85.8
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 3.2e-152 542.0 325 86.2
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 7.2e-152 540.8 325 86.5
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 1.3e-150 536.6 325 85.2
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.5e-146 523.1 325 83.1
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 6.1e-143 511.1 325 79.7
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 3.0e-134 482.3 328 75.9
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 1.1e-131 473.8 328 74.1
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 4.7e-127 458.4 338 70.7
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 4.7e-127 458.4 338 71.3
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 8.0e-127 457.6 326 76.4
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 2.3e-126 456.1 326 73.0
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 2.3e-126 456.1 338 70.4
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 3.0e-126 455.7 326 75.2
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 6.7e-126 454.5 338 70.4
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.0e-125 453.0 334 70.4
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.3e-124 450.3 330 71.8
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 1.7e-124 449.9 326 75.8
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.4e-123 446.8 329 71.4
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.4e-123 446.8 330 73.6
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 5.3e-123 444.9 323 73.4
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 7.0e-123 444.5 328 71.3
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 9.1e-123 444.1 329 70.5
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 9.1e-123 444.1 324 68.8
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 2.7e-122 442.6 327 72.8
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 3.5e-122 442.2 325 73.5
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 5.9e-122 441.4 332 68.4
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 2.9e-121 439.1 327 70.3
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 8.5e-121 437.6 327 68.8
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.9e-120 436.4 331 66.8
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 2.5e-120 436.0 326 67.8
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.5e-120 436.0 332 71.7
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 3.2e-120 435.6 326 67.2
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 4.2e-120 435.3 324 71.9
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 5.5e-120 434.9 333 68.2
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 7.2e-120 434.5 328 68.3
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 7.2e-120 434.5 327 70.0
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 9.4e-120 434.1 324 68.5
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 1.2e-119 433.7 323 71.5
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 1.2e-119 433.7 334 67.1
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 2.1e-119 433.0 341 66.0
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 3.6e-119 432.2 336 68.5
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 4.7e-119 431.8 329 69.9
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 4.7e-119 431.8 327 70.6
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 4.7e-119 431.8 330 71.2
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 6.1e-119 431.4 335 66.0
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 6.1e-119 431.4 329 69.3
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 8.0e-119 431.0 327 68.5
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 1.4e-118 430.3 327 68.2
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.4e-118 430.3 327 68.8
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.4e-118 430.3 331 68.3
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.8e-118 429.9 327 70.3
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 3.0e-118 429.1 335 66.9
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 3.0e-118 429.1 329 69.0
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 4.0e-118 428.7 333 65.5
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 4.0e-118 428.7 333 66.4
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 5.2e-118 428.3 327 70.3
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 5.2e-118 428.3 327 67.3
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 6.8e-118 427.9 331 67.7
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 6.8e-118 427.9 328 66.8
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 1.2e-117 427.2 323 65.3
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 1.5e-117 426.8 336 65.5
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 2.0e-117 426.4 323 66.6
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.6e-117 426.0 327 68.2
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 5.7e-117 424.9 281 74.7
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 9.8e-117 424.1 323 70.9
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 9.8e-117 424.1 331 65.9
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.3e-116 423.7 332 64.2
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 1.3e-116 423.7 331 65.6
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.7e-116 423.3 334 63.5
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 2.2e-116 422.9 323 70.6
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.8e-116 422.5 332 64.5
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 3.7e-116 422.2 327 68.5
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 6.3e-116 421.4 324 64.8
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 1.8e-115 419.9 328 65.2
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 9.1e-115 417.5 324 68.8
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.6e-114 416.8 335 68.1
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 3.5e-114 415.6 324 64.5
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 5.9e-114 414.8 334 64.1
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 1.3e-113 413.7 354 62.1
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 5.0e-113 411.8 331 63.1
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 4.2e-112 408.7 328 64.6
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.2e-111 407.1 334 63.2
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 1.6e-111 406.8 327 64.2
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.6e-111 406.8 324 64.8
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 4.0e-110 402.1 368 59.5
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 4.0e-110 402.1 353 61.8
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 5.2e-110 401.7 319 66.8
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 1.7e-108 396.7 319 66.1
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 8.3e-108 394.4 323 66.9
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 8.3e-108 394.4 327 61.8
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 1.6e-106 390.2 327 61.2
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 2.7e-106 389.4 266 74.1
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 8.6e-105 384.4 511 46.2
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 3.0e-102 375.9 392 52.3
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 5.7e-101 371.7 320 63.1
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.3e-100 370.5 263 68.4
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 3.5e-98 362.5 265 67.2
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.3e-97 360.5 327 59.0
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 4.7e-95 352.1 296 61.5
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.5e-85 320.5 206 79.1
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 7.8e-82 308.1 188 81.9
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.5e-80 303.9 264 54.9
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.1e-78 296.2 200 74.0
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 2.6e-77 293.1 183 77.6
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 9.9e-77 291.2 262 54.2
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 3.2e-75 286.2 175 78.9
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.1e-72 277.7 176 76.7
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 3.3e-72 276.2 168 79.8
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 3.6e-71 272.7 167 78.4
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 5.3e-54 215.7 121 88.4
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 3.2e-51 206.5 190 60.0
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.5e-48 197.6 124 76.6
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 6.2e-47 192.2 190 61.1
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 7.6e-45 185.3 118 76.3
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 2.2e-44 183.7 163 55.2
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.9e-43 180.6 118 73.7
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 6.3e-39 165.6 112 70.5
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.2e-37 161.4 153 66.0
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.7e-34 150.2 118 66.1
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.1e-32 144.8 95 75.8
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.4e-17 94.7 73 63.0
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 5.5e-11 72.8 163 33.1
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 2.7e-10 70.5 148 37.8
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 2.7e-10 70.5 49 67.3
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 1.0e-09 68.6 179 27.9
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 8.8e-09 65.5 143 31.5
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.7e-07 61.2 144 34.0
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 3.7e-07 60.1 177 27.7
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.8e-06 57.8 184 29.3
Pp3c12_8840 Physcomitrium patens HOM05D005825 ORTHO05D006483 1.8e-06 57.8 158 31.0
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 4.1e-06 56.6 53 64.2
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 9.1e-06 55.5 145 31.7


User provided reference genes

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