Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 6.9e-240 833.6 420 100.0
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 6.5e-238 827.0 420 98.8
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 1.9e-221 772.3 420 93.8
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 5.5e-221 770.8 420 94.0
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 1.8e-211 739.2 421 89.5
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.1e-205 719.9 421 88.4
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 2.5e-205 718.8 386 95.1
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 8.0e-204 713.8 394 90.6
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 8.0e-204 713.8 394 90.6
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 4.0e-203 711.4 395 90.6
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 1.0e-187 660.2 424 82.3
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 9.8e-186 653.7 416 82.5
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 1.6e-183 646.4 425 79.1
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 4.7e-180 634.8 427 77.3
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.5e-178 629.8 426 75.4
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 7.5e-178 627.5 422 76.8
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 2.2e-177 625.9 427 76.1
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 6.4e-177 624.4 392 80.9
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 2.0e-167 592.8 429 71.1
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 2.7e-167 592.4 427 71.0
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 5.0e-166 588.2 361 78.7
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 2.5e-165 585.9 427 69.8
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 4.3e-165 585.1 404 72.3
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 7.3e-165 584.3 363 77.4
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 7.3e-165 584.3 363 78.2
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 1.6e-164 583.2 400 72.8
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 2.8e-164 582.4 396 73.0
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 6.2e-164 581.3 425 69.6
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 1.1e-163 580.5 362 77.6
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 2.3e-163 579.3 432 67.4
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 3.1e-163 578.9 396 71.7
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 4.0e-163 578.6 435 68.5
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 4.0e-163 578.6 425 70.1
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 4.0e-163 578.6 363 77.1
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 4.0e-163 578.6 426 68.8
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 5.2e-163 578.2 430 67.7
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 6.8e-163 577.8 425 68.5
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 8.9e-163 577.4 430 68.8
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 1.2e-162 577.0 425 67.8
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 1.5e-162 576.6 428 70.1
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 1.5e-162 576.6 361 76.7
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 2.6e-162 575.9 363 76.0
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 3.4e-162 575.5 428 67.8
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 4.4e-162 575.1 421 69.6
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 9.9e-162 573.9 419 69.5
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.3e-161 573.5 425 68.2
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 1.7e-161 573.2 348 78.7
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 2.9e-161 572.4 420 69.5
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 3.7e-161 572.0 340 79.7
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.7e-161 572.0 393 71.8
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 6.4e-161 571.2 402 71.6
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 6.4e-161 571.2 360 76.1
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 8.3e-161 570.9 361 76.2
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 8.3e-161 570.9 425 67.5
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 8.3e-161 570.9 392 72.2
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 1.1e-160 570.5 363 76.3
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 4.1e-160 568.5 414 70.0
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 7.1e-160 567.8 438 66.2
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 7.1e-160 567.8 363 76.3
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 1.2e-159 567.0 361 76.2
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 1.6e-159 566.6 361 75.6
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 2.1e-159 566.2 339 79.6
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 2.1e-159 566.2 432 68.5
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 3.5e-159 565.5 450 66.4
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 1.3e-158 563.5 368 73.6
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 1.7e-158 563.1 364 74.7
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.3e-158 562.8 361 75.6
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 3.0e-158 562.4 347 77.8
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 3.9e-158 562.0 344 78.2
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 6.6e-158 561.2 387 70.5
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 8.6e-158 560.8 426 67.1
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 1.5e-157 560.1 354 76.6
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.5e-157 560.1 364 74.2
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.9e-157 559.7 361 75.3
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 2.8e-156 555.8 348 76.4
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 3.6e-156 555.4 425 67.1
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 3.6e-156 555.4 431 65.2
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.4e-155 553.5 379 71.8
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 2.4e-155 552.7 427 67.7
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 7.6e-154 547.7 432 64.6
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 9.2e-152 540.8 367 71.9
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 6.0e-151 538.1 370 70.8
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 1.9e-149 533.1 330 76.7
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 7.3e-149 531.2 387 69.0
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 2.4e-147 526.2 425 63.5
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 7.1e-144 514.6 342 71.6
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 3.5e-143 512.3 353 71.4
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 6.0e-143 511.5 344 70.6
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.9e-142 508.8 435 62.8
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 5.1e-142 508.4 305 79.3
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 2.5e-141 506.1 306 77.8
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 5.6e-141 505.0 403 66.3
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 6.9e-139 498.0 342 69.0
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.5e-138 496.9 371 66.8
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 2.0e-138 496.5 372 68.0
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 7.1e-136 488.0 387 65.4
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 3.5e-135 485.7 351 66.7
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 5.1e-134 481.9 295 78.0
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 4.3e-133 478.8 361 66.8
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 2.4e-131 473.0 351 69.8
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 1.7e-129 466.8 268 83.6
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 8.4e-129 464.5 240 97.5
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.9e-128 463.4 340 65.6
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 1.0e-126 457.6 360 66.1
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 1.3e-124 450.7 346 65.6
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 2.1e-124 449.9 359 61.6
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 4.9e-121 438.7 454 54.8
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 2.1e-119 433.3 339 60.2
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 1.5e-114 417.2 361 58.7
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 3.6e-111 406.0 247 80.6
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 8.8e-110 401.4 250 75.6
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.9e-90 335.5 209 76.6
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 5.2e-86 322.4 189 81.0
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 2.0e-85 320.5 200 74.5
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 1.6e-74 284.3 202 66.8
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 2.8e-68 263.5 278 50.4
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 1.7e-52 211.1 365 37.5
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 1.6e-42 177.9 123 74.8
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 1.2e-37 161.8 242 40.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 8.4e-36 155.6 113 62.8
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.3e-33 148.3 98 67.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 9.6e-32 142.1 84 76.2
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 3.9e-25 120.2 189 39.2
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 2.9e-20 104.0 161 37.9
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 5.4e-19 99.8 71 62.0
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 6.7e-17 92.8 121 44.6
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.5e-16 91.7 121 43.8
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.3e-14 83.2 44 81.8
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.8e-13 79.7 74 60.8
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 2.7e-10 70.9 99 38.4
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 3.5e-10 70.5 112 42.9
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 3.3e-08 63.9 96 40.6
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 1.6e-07 61.6 30 90.0


User provided reference genes

Program Settings