Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08337 Brassica carinata HOM05D007351 ORTHO05D009386 3.0e-116 421.8 201 100.0
C04p55560 Brassica napus HOM05D007351 ORTHO05D009386 3.0e-116 421.8 201 100.0
BolC4t27080H Brassica oleracea HOM05D007351 ORTHO05D009386 3.0e-116 421.8 201 100.0
BraA04t17570Z Brassica rapa HOM05D007351 ORTHO05D009386 3.3e-115 418.3 201 99.5
A04p19820 Brassica napus HOM05D007351 ORTHO05D009386 4.3e-115 417.9 201 99.5
BcaB06g28079 Brassica carinata HOM05D007351 ORTHO05D009386 1.2e-112 409.8 201 97.5
Thhalv10000330m.g Eutrema salsugineum HOM05D007351 ORTHO05D009386 8.2e-106 387.1 201 93.5
AT2G25605 Arabidopsis thaliana HOM05D007351 ORTHO05D009386 1.5e-104 382.9 202 94.1
CARHR115710 Cardamine hirsuta HOM05D007351 ORTHO05D009386 7.6e-104 380.6 202 93.1
Carub.0004s0533 Capsella rubella HOM05D007351 ORTHO05D009386 5.0e-103 377.9 201 91.5
AL4G17070 Arabidopsis lyrata HOM05D007351 ORTHO05D009386 3.6e-101 371.7 201 90.5
Aa31sc586G10 Aethionema arabicum HOM05D007351 ORTHO05D009386 4.1e-97 358.2 201 88.1
THA.LOC104804500 Tarenaya hassleriana HOM05D007351 ORTHO05D009386 2.0e-91 339.3 201 83.6
Eucgr.C01805 Eucalyptus grandis HOM05D007351 ORTHO05D009386 8.5e-87 323.9 168 88.7
Prupe.1G471900 Prunus persica HOM05D007351 ORTHO05D009386 4.2e-86 321.6 197 77.2
GSVIVG01035772001 Vitis vinifera HOM05D007351 ORTHO05D009386 1.2e-85 320.1 204 78.4
Nn2g11909 Nelumbo nucifera HOM05D007351 ORTHO05D009386 1.6e-85 319.7 201 77.6
Thecc.09G147600 Theobroma cacao HOM05D007351 ORTHO05D009386 2.1e-85 319.3 167 88.6
COL.COLO4_24001 Corchorus olitorius HOM05D007351 ORTHO05D009386 4.7e-85 318.2 167 87.4
Sabra06G0194800 Salix brachista HOM05D007351 ORTHO05D009386 1.4e-84 316.6 202 77.2
Atru.chr7.2359 Acer truncatum HOM05D007351 ORTHO05D009386 2.3e-84 315.8 166 87.3
Manes.16G118400 Manihot esculenta HOM05D007351 ORTHO05D009386 2.3e-84 315.8 166 86.1
Gorai.004G110800 Gossypium raimondii HOM05D007351 ORTHO05D009386 3.0e-84 315.5 200 78.0
MD08G1141900 Malus domestica HOM05D007351 ORTHO05D009386 3.0e-84 315.5 168 85.7
Potri.006G249000 Populus trichocarpa HOM05D007351 ORTHO05D009386 3.0e-84 315.5 204 77.0
Actinidia15698 Actinidia chinensis HOM05D007351 ORTHO05D009386 3.9e-84 315.1 201 75.1
arahy.Tifrunner.gnm1.ann1.C4YKET Arachis hypogaea HOM05D007351 ORTHO05D009386 3.9e-84 315.1 166 86.1
Lj8A616G46 Lonicera japonica HOM05D007351 ORTHO05D009386 3.9e-84 315.1 203 76.8
CiPaw.08G014100 Carya illinoinensis HOM05D007351 ORTHO05D009386 6.7e-84 314.3 164 87.2
Ciclev10009550m.g Citrus clementina HOM05D007351 ORTHO05D009386 8.8e-84 313.9 169 87.6
TAR625G1337 Trochodendron aralioides HOM05D007351 ORTHO05D009386 8.8e-84 313.9 166 86.1
Gohir.A08G090000 Gossypium hirsutum HOM05D007351 ORTHO05D009386 2.6e-83 312.4 194 76.8
Hma1.2p1_0000F.1_g000940 Hydrangea macrophylla HOM05D007351 ORTHO05D009386 2.6e-83 312.4 197 77.7
TWI34G1290 Tripterygium wilfordii HOM05D007351 ORTHO05D009386 4.4e-83 311.6 166 85.5
Ca_15711_v3 Cicer arietinum L. HOM05D007351 ORTHO05D009386 5.7e-83 311.2 194 75.3
PSO170G0157 Papaver somniferum HOM05D007351 ORTHO05D009386 7.4e-83 310.8 167 86.2
PSO017G1621 Papaver somniferum HOM05D007351 ORTHO05D009386 9.7e-83 310.5 167 85.6
CSS0046405 Camellia sinensis var. sinensis HOM05D007351 ORTHO05D009386 1.3e-82 310.1 166 86.1
FvH4_2g29770 Fragaria vesca HOM05D007351 ORTHO05D009386 1.3e-82 310.1 166 84.3
FAN24G0983 Fragaria x ananassa HOM05D007351 ORTHO05D009386 1.3e-82 310.1 166 84.3
FAN27G2935 Fragaria x ananassa HOM05D007351 ORTHO05D009386 1.3e-82 310.1 166 84.3
RcHm_v2.0_Chr6g0298791 Rosa chinensis HOM05D007351 ORTHO05D009386 1.7e-82 309.7 166 84.9
Lj1g0014043 Lotus japonicus HOM05D007351 ORTHO05D009386 2.2e-82 309.3 193 73.6
FAN15G3188 Fragaria x ananassa HOM05D007351 ORTHO05D009386 4.8e-82 308.1 166 84.3
Psat5g027160 Pisum sativum HOM05D007351 ORTHO05D009386 4.8e-82 308.1 194 74.7
MBI04_g00950_MAGBIO Magnolia biondii HOM05D007351 ORTHO05D009386 6.3e-82 307.8 197 75.1
EL10Ac2g02569 Beta vulgaris HOM05D007351 ORTHO05D009386 8.2e-82 307.4 205 75.6
Cpa.g.sc91.32 Carica papaya HOM05D007351 ORTHO05D009386 1.1e-81 307.0 206 74.3
Medtr3g107860 Medicago truncatula HOM05D007351 ORTHO05D009386 3.1e-81 305.4 165 83.0
Peaxi162Scf00251g01128 Petunia axillaris HOM05D007351 ORTHO05D009386 5.3e-81 304.7 187 75.9
Sc06g0000580 Simmondsia chinensis HOM05D007351 ORTHO05D009386 5.3e-81 304.7 200 74.0
arahy.Tifrunner.gnm1.ann1.8MNE4Q Arachis hypogaea HOM05D007351 ORTHO05D009386 2.6e-80 302.4 187 76.5
Lalb_Chr23g0268831 Lupinus albus HOM05D007351 ORTHO05D009386 2.6e-80 302.4 201 72.1
Cc11_g01660 Coffea canephora HOM05D007351 ORTHO05D009386 3.5e-80 302.0 167 83.2
Nitab4.5_0000508g0220 Nicotiana tabacum HOM05D007351 ORTHO05D009386 3.5e-80 302.0 201 73.1
Glyma.06G071600 Glycine max HOM05D007351 ORTHO05D009386 4.5e-80 301.6 166 81.3
HanXRQChr13g0402411 Helianthus annuus HOM05D007351 ORTHO05D009386 4.5e-80 301.6 197 75.6
PGSC0003DMG400007382 Solanum tuberosum HOM05D007351 ORTHO05D009386 1.0e-79 300.4 202 72.8
TPR.G27335 Trifolium pratense HOM05D007351 ORTHO05D009386 1.0e-79 300.4 190 74.2
Migut.A00300 Erythranthe guttata HOM05D007351 ORTHO05D009386 1.3e-79 300.1 168 81.5
MSTRG.11754 Avicennia marina HOM05D007351 ORTHO05D009386 1.7e-79 299.7 168 81.5
Solyc08g067430.4 Solanum lycopersicum HOM05D007351 ORTHO05D009386 2.2e-79 299.3 201 71.6
Glyma.04G069700 Glycine max HOM05D007351 ORTHO05D009386 2.9e-79 298.9 201 71.1
AUR62032351 Chenopodium quinoa HOM05D007351 ORTHO05D009386 6.5e-79 297.7 177 79.7
Rhsim07G0150700 Rhododendron simsii HOM05D007351 ORTHO05D009386 8.5e-79 297.4 213 70.0
Phvul.009G096100 Phaseolus vulgaris HOM05D007351 ORTHO05D009386 1.1e-78 297.0 166 80.1
Hund03010 Selenicereus undatus HOM05D007351 ORTHO05D009386 1.9e-78 296.2 166 83.1
Aqoxy7G02003 Aquilegia oxysepala HOM05D007351 ORTHO05D009386 3.2e-78 295.4 184 76.6
SGA_v2.0_scaffold448G51771 Striga asiatica HOM05D007351 ORTHO05D009386 5.5e-78 294.7 172 79.7
ECA233G0102 Erigeron canadensis HOM05D007351 ORTHO05D009386 9.4e-78 293.9 167 80.8
Lsat_1_v5_gn_6_21681 Lactuca sativa HOM05D007351 ORTHO05D009386 1.2e-77 293.5 197 72.6
Os05g0574700 Oryza sativa ssp. japonica HOM05D007351 ORTHO05D009386 4.7e-77 291.6 188 72.9
MELO3C003678.2 Cucumis melo HOM05D007351 ORTHO05D009386 6.1e-77 291.2 198 70.2
ATR0680G179 Amborella trichopoda HOM05D007351 ORTHO05D009386 1.4e-76 290.0 170 80.6
unitig_32.g11667 Utricularia gibba HOM05D007351 ORTHO05D009386 3.0e-76 288.9 175 78.3
Sed0005695 Sechium edule HOM05D007351 ORTHO05D009386 5.2e-76 288.1 200 68.0
Sopen08g021360 Solanum pennellii HOM05D007351 ORTHO05D009386 1.2e-75 287.0 202 70.3
vmacro05202 Vaccinium macrocarpon HOM05D007351 ORTHO05D009386 1.2e-75 287.0 153 85.0
CDE06G1133 Ceratophyllum demersum HOM05D007351 ORTHO05D009386 2.6e-75 285.8 169 81.1
Sp4g05090 Schrenkiella parvula HOM05D007351 ORTHO05D009386 4.4e-75 285.0 140 95.7
Nitab4.5_0002339g0070 Nicotiana tabacum HOM05D007351 ORTHO05D009386 5.7e-75 284.6 170 78.2
AUR62041846 Chenopodium quinoa HOM05D007351 ORTHO05D009386 7.7e-72 274.2 164 80.5
VMungo1309G2796 Vigna mungo HOM05D007351 ORTHO05D009386 9.4e-70 267.3 177 72.3
Duzib150G1343 Durio zibethinus HOM05D007351 ORTHO05D009386 5.2e-68 261.5 141 88.7
Gohir.D08G102800 Gossypium hirsutum HOM05D007351 ORTHO05D009386 1.2e-67 260.4 175 74.9
CsaV3_3G046600 Cucumis sativus L. HOM05D007351 ORTHO05D009386 2.8e-66 255.8 141 80.9
SEGI_27006 Sequoiadendron giganteum HOM05D007351 ORTHO05D009386 2.8e-66 255.8 172 69.2
PGR031G1798 Punica granatum HOM05D007351 ORTHO05D009386 6.3e-66 254.6 135 85.2
QL12p031742 Quercus lobata HOM05D007351 ORTHO05D009386 1.1e-65 253.8 137 85.4
DCAR_003046 Daucus carota HOM05D007351 ORTHO05D009386 1.7e-63 246.5 143 81.1
CANSAT11G2455 Cannabis sativa HOM05D007351 ORTHO05D009386 8.6e-63 244.2 172 68.6
Mapoly0036s0071 Marchantia polymorpha HOM05D007351 ORTHO05D009386 4.2e-62 241.9 167 66.5
Zm00001eb344390 Zea mays HOM05D007351 ORTHO05D009386 1.2e-61 240.4 169 68.0
Pp3c17_16830 Physcomitrium patens HOM05D007351 ORTHO05D009386 2.0e-59 233.0 177 63.8
SMO269G0024 Selaginella moellendorffii HOM05D007351 ORTHO05D009386 3.4e-59 232.3 154 68.8
Oeu045191.1 Olea europaea HOM05D007351 ORTHO05D009386 2.8e-58 229.2 180 66.7
Haze_21592 Corylus avellana HOM05D007351 ORTHO05D009386 9.2e-57 224.2 111 91.0
AagrBONN_evm.TU.Sc2ySwM_228.1243 Anthoceros agrestis HOM05D007351 ORTHO05D009386 1.2e-56 223.8 152 69.7
CBR_g40414 Chara braunii HOM05D007351 ORTHO05D009386 1.3e-47 193.7 154 58.4
CANSAT54G2502 Cannabis sativa HOM05D007351 ORTHO05D009386 3.6e-45 185.7 143 65.0
Cre17.g746897 Chlamydomonas reinhardtii HOM05D007351 ORTHO05D009386 1.2e-29 134.0 140 45.0
vmacro05206 Vaccinium macrocarpon HOM05D007351 ORTHO05D009386 1.9e-17 93.6 165 37.6
Pp3c16_22900 Physcomitrium patens HOM05D033550 ORTHO05D017832 2.9e-10 69.7 133 36.1
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 7.1e-09 65.1 37 75.7
Mapoly0006s0206 Marchantia polymorpha HOM05D017363 ORTHO05D018319 2.7e-08 63.2 165 24.2
SMO356G0529 Selaginella moellendorffii HOM05D017363 ORTHO05D018319 2.3e-07 60.1 180 28.9
SEGI_25541 Sequoiadendron giganteum HOM05D007351 ORTHO05D017832 3.0e-07 59.7 137 31.4
Cre16.g683300 Chlamydomonas reinhardtii HOM05D027270 ORTHO05D017832 9.6e-06 54.7 132 31.1


User provided reference genes

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